Heme biosynthesis (WP561)
Homo sapiens
The enzymatic process that produces heme is properly called porphyrin synthesis, as all the intermediates are tetrapyrroles that are chemically classified are porphyrins. The process is highly conserved across biology. In humans, this pathway serves almost exclusively to form heme. In other species, it also produces similar substances such as cobalamin (vitamin B12). The pathway is initiated by the synthesis of D-Aminolevulinic acid (dALA or δALA) from the amino acid glycine and succinyl-CoA from the citric acid cycle (Krebs cycle). The rate-limiting enzyme responsible for this reaction, ALA synthase, is strictly regulated by intracellular iron levels and heme concentration. A low-iron level, e.g., in iron deficiency, leads to decreased porphyrin synthesis, which prevents accumulation of the toxic intermediates. This mechanism is of therapeutic importance: infusion of heme arginate or hematin can abort attacks of porphyria in patients with an inborn error of metabolism of this process, by reducing transcription of ALA synthase. The organs mainly involved in heme synthesis are the liver and the bone marrow, although every cell requires heme to function properly. Heme is seen as an intermediate molecule in catabolism of haemoglobin in the process of bilirubin metabolism. Source: Wikipedia http://en.wikipedia.org/wiki/Heme
Authors
Kdahlquist , Kristina Hanspers , Caroline Miller , Andra Waagmeester , Alex Pico , Egon Willighagen , Martina Summer-Kutmon , Denise Slenter , and Eric WeitzActivity
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Organisms
Homo sapiensCommunities
Annotations
Pathway Ontology
heme biosynthetic pathwayCell Type Ontology
hematopoietic cell bone marrow cellLabel | Type | Compact URI | Comment |
---|---|---|---|
delta-aminolevulinate | Metabolite | chemspider:10447539 | |
O2 | Metabolite | hmdb:HMDB0001377 | |
porphobilinogen | Metabolite | cas:487-90-1 | |
NH3 | Metabolite | hmdb:HMDB0000051 | |
H+ | Metabolite | pubchem.compound:1038 | |
H2O2 | Metabolite | hmdb:HMDB0003125 | |
CoA | Metabolite | hmdb:HMDB0001423 | |
uroporphyrinogen III | Metabolite | cas:1976-85-8 | |
CO2 | Metabolite | hmdb:HMDB0001967 | |
succinyl-CoA | Metabolite | hmdb:HMDB0001022 | |
Glycine | Metabolite | hmdb:HMDB0000123 | |
H2O | Metabolite | hmdb:HMDB0002111 | Type your comment here |
coproporphyrinogen III | Metabolite | cas:2624-63-7 | |
Porphobilinogen | Metabolite | hmdb:HMDB0000245 | |
hydroxymethylbilane | Metabolite | chebi:16645 | |
H2O | Metabolite | hmdb:HMDB0002111 | |
Fe2+ | Metabolite | pubchem.compound:27284 | |
protoheme | Metabolite | cas:14875-96-8 | |
protoporphyrin IX | Metabolite | cas:553-12-8 | |
ALAS2 | GeneProduct | ncbigene:212 | |
FECH | GeneProduct | ncbigene:2235 | |
PPOX | GeneProduct | ncbigene:5498 | |
CPOX | GeneProduct | ncbigene:1371 | |
HMBS | GeneProduct | ncbigene:3145 | |
ALAS1 | GeneProduct | ncbigene:211 | |
ALAD | GeneProduct | ncbigene:210 | |
UROS | GeneProduct | ncbigene:7390 | |
UROD | GeneProduct | ncbigene:7389 |
References
- Heme biosynthesis pathway regulation in a model of hepatocarcinogenesis pre-initiation. Polo CF, Vazquez ES, Caballero F, Gerez E, Battle AM. Comp Biochem Physiol B. 1992 Sep;103(1):251–6. PubMed Europe PMC Scholia