Vitamin B6-dependent and responsive disorders (WP4228)
Homo sapiens
Vitamin B6 is absorbed in different vitamers, which undergo several (de)phosphorylation steps, to be able to pas the blood-brain barrier. Within the brain, PLP (pyridoxal-P) is the only active cofactor for intracellular enzyme reactions. PLP catalyses over 100 reactions, mainly related to amino acids and neurotransmitter metabolism. Bold lines in the pathway diagram show how the major source of PLP is divided in the body. A number of genetic defects have been identified as the underlying cause of vitamin B6 dependent epilepsies, particularly occurring in the neonatal life stage, which could lead to irreversible brain damage or death. The disorders related to this pathway can be divided in two categories: reduced production/availability of PLP or inactivation of PLP by formation of Knoevenagel products. Specific biomarkers from urine, plasma or cerebrospinal fluid (CSF) exist to distinguish the disorders. Oral treatment with PL or PLP is available, as well as intrauterine treatment with vitamin B6 for mothers in the early stages of pregnancy. This pathway was inspired by Ed. 5 Chapter 34 of the book of Blau (ISBN 9783030677268) (ed.4 Chapter 11).
Authors
Lisa Martina Held , Denise Slenter , Egon Willighagen , Kristina Hanspers , Irene Hemel , Martina Summer-Kutmon , Friederike Ehrhart , Susan Coort , Marvin Martens , Finterly Hu , and Eric WeitzActivity
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Organisms
Homo sapiensCommunities
Diseases Inherited Metabolic Disorders (IMD) Pathways Rare DiseasesAnnotations
Disease Ontology
hypophosphatasia childhood hypophosphatasia pyridoxine-dependent epilepsy infantile hypophosphatasia epilepsy hyperprolinemia type 2 early-onset vitamin B6-dependent epilepsy pyridoxamine 5'-phosphate oxidase deficiencyPathway Ontology
proline metabolic pathway hypophosphatasia pathway vitamin B6 metabolic pathway hyperprolinemia type II pathway lysine degradation pathway disease pathwayCell Type Ontology
neural cellLabel | Type | Compact URI | Comment |
---|---|---|---|
2-keto 6-aminocaproic acid | Metabolite | chebi:17534 | |
L-lysine | Metabolite | chebi:18019 | |
pyridoxal | Metabolite | chebi:17310 | |
Pipecolic acid | Metabolite | chebi:30913 | |
P5C | Metabolite | chebi:17388 | delta1-pyrroline-5-carboxylate (P5C) |
PLP | Metabolite | chebi:18405 | Pyridoxal-5-Phosphate (=PLP) |
Pyridoxamine-p | Metabolite | chebi:18335 | |
Pyridoxal-P | Metabolite | chebi:18405 | |
Piperideine-2-carboxylate | Metabolite | chebi:16187 | |
Vitamin B6 | Metabolite | chebi:27306 | |
Pyridoxal | Metabolite | chebi:17310 | AKA PL |
Glutamic semialdehyde | Metabolite | chebi:58066 | Drawing in Chapter 11 Blau contains an error for this metabolite, one carbon is missing from the structure! |
Saccharopine | Metabolite | chebi:16927 | |
L-proline | Metabolite | chebi:17203 | |
Pyridoxine-P | Metabolite | chebi:28803 | |
Pyridoxamine | Metabolite | chebi:57761 | |
Glutamic acid | Metabolite | chebi:29985 | |
Alpha aminoadipic semialdehyde | Metabolite | pubchem.compound:207 | |
alpha aminoadipic acid | Metabolite | chebi:37024 | |
Pyridoxine | Metabolite | chebi:16709 | |
Pyridoxine-glucoside | Metabolite | chebi:17382 | pyridoxine-5'-beta-D-glucoside aka PNG aka pyridoxine-glucoside |
P6C | Metabolite | chebi:16987 | piperideine-6-carboxylate |
PNPO | GeneProduct | ensembl:ENSG00000108439 | pyridoxamine 5'-phosphate oxidase |
PLPBP | Protein | uniprot:O94903 | AKA PROSC'The pyridoxal 5'-phosphate-binding protein (PLPBP) is an evolutionarily conserved protein linked to pyridoxal 5'-phosphate-binding. Although mutations in PLPBP were shown to cause vitamin B6-dependent epilepsy, its cellular role and function remain elusive. ' [PMID:31825581]Dimer [PMID:31825581] |
ALPL | Protein | ensembl:ENSG00000162551 | Alkaline phosphatase |
IP | Protein | ensembl:ENSG00000163295 | Intestinal alkaline phosphatases |
P5C dehydrogenase | Protein | interpro:IPR005931 | |
Antiquitin | Protein | ensembl:ENSG00000164904 | Aldehyde dehydrogenase 7 family, member A1, also known as ALDH7A1 or antiquitin |
PIGV anchor | Protein | ensembl:ENSG00000060642 | |
PK | Protein | uniprot:O00764 | Phosphate kinase |
PK | Protein | uniprot:O00764 | Phosphate kinase, Pyridoxal kinase |
PNPO | Protein | ensembl:ENSG00000108439 | pyridoxamine 5'-phosphate oxidase |
References
- Physician’s Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases [Internet]. Blau N, Duran M, Gibson KM, Dionisi-Vici C. Springer; 2014. 0 p. Available from: https://books.google.com/books/about/Physician_s_Guide_to_the_Diagnosis_Treat.html?hl=&id=wJRBnwEACAAJ OpenLibrary Worldcat
- B6-responsive disorders: a model of vitamin dependency. Clayton PT. J Inherit Metab Dis. 2006;29(2–3):317–26. PubMed Europe PMC Scholia
- Biochemical and Proteomic Studies of Human Pyridoxal 5’-Phosphate-Binding Protein (PLPBP). Fux A, Sieber SA. ACS Chem Biol. 2020 Jan 17;15(1):254–61. PubMed Europe PMC Scholia