Sphingolipid metabolism: integrated pathway (WP4726)

Homo sapiens

New PW, homology converted

Authors

Denise Slenter , Kristina Hanspers , Eric Weitz , Conroy lipids , and Egon Willighagen

Activity

last edited

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Cited In

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Organisms

Homo sapiens

Communities

Lipids and LIPID MAPS

Annotations

Pathway Ontology

cholesterol biosynthetic pathway sphingolipid biosynthetic pathway sphingomyelin metabolic pathway sphingolipid metabolic pathway

Participants

Label Type Compact URI Comment
ATP Metabolite chebi:30616
3-keto-sphinganine Metabolite lipidmaps:LMSP01020002
Palmitoyl-CoA Metabolite lipidmaps:LMFA07050360 aka CoA(16:0)
Serine Metabolite pubchem.compound:5951
Hexadecanal Metabolite lipidmaps:LMFA06000088
Ethanolamine-phosphate Metabolite pubchem.compound:1015
H2O Metabolite chebi:15377
Sphingosine Metabolite lipidmaps:LMSP01010001
Sphinganine Metabolite lipidmaps:LMSP01020001
Sphinganine-1-phosphate Metabolite lipidmaps:LMSP01050002
C16 SM Metabolite lipidmaps:LMSP03010003 SM = sphingomyelin
C16 GlcCer Metabolite lipidmaps:LMSP0501AA03
C16DH SM Metabolite lipidmaps:LMSP03010004 SM = sphingomyelin
C16DH GlcCer Metabolite lipidmaps:LMSP0501AA04
Sphingosine-1-phosphate Metabolite lipidmaps:LMSP01050001
1-Hexadecenal Metabolite lipidmaps:LMFA06000088
CoA(16:0) Metabolite lipidmaps:LMFA07050360
CoA(18:0) Metabolite chebi:15541
CoA(20:0) Metabolite chebi:15527
CoA(22:0) Metabolite cas:24330-89-0 AKA 'Coenzyme A, S-​docosanoate'
CoA(24:0) Metabolite cas:24305-30-4 AKA 'Coenzyme A, S-​(tetracosanoate)​'
CoA(24:1) Metabolite cas:88362-35-0 AKA 'Coenzyme A, S-​(15Z)​-​15-​tetracosenoate'
C16DH-Cer Metabolite lipidmaps:LMSP02020001
CoA(26:0) Metabolite cas:99313-57-2 AKA 'Coenzyme A, S-​hexacosanoate'
CoA(26:1) Metabolite lipidmaps:LMFA07050099
ADP Metabolite chebi:456216
C16 Cer Metabolite lipidmaps:LMSP02010004
C18 SM Metabolite lipidmaps:LMSP03010001 SM = sphingomyelin
C18 GlcCer Metabolite lipidmaps:LMSP0501AA05
C18DH SM Metabolite lipidmaps:LMSP03010020 SM = sphingomyelin
C18DH GlcCer Metabolite lipidmaps:LMSP0501AA19
C18DH-Cer Metabolite lipidmaps:LMSP02020008
C18 Cer Metabolite lipidmaps:LMSP02010006
C20 SM Metabolite lipidmaps:LMSP03010005 SM = sphingomyelin
C20 GlcCer Metabolite lipidmaps:LMSP0501AA06
C20DH SM Metabolite lipidmaps:LMSP03010021 SM = sphingomyelin
C20DH GlcCer Metabolite lipidmaps:LMSP0501AA20
C20DH-Cer Metabolite lipidmaps:LMSP02020009
C20 Cer Metabolite lipidmaps:LMSP02010007
C22 SM Metabolite lipidmaps:LMSP03010006 SM = sphingomyelin
C22 GlcCer Metabolite lipidmaps:LMSP0501AA07
C22DH SM Metabolite lipidmaps:LMSP03010022 SM = sphingomyelin
C22DH GlcCer Metabolite lipidmaps:LMSP0501AA21
C22DH-Cer Metabolite lipidmaps:LMSP02020010
C22 Cer Metabolite lipidmaps:LMSP02010008
C24 SM Metabolite lipidmaps:LMSP03010008 SM = sphingomyelin
C24 GlcCer Metabolite lipidmaps:LMSP0501AA09
C24DH SM Metabolite lipidmaps:LMSP03010024 SM = sphingomyelin
C24DH GlcCer Metabolite lipidmaps:LMSP0501AA23
C24DH-Cer Metabolite lipidmaps:LMSP02020012
C24 Cer Metabolite lipidmaps:LMSP02010012
C24:1 SM Metabolite lipidmaps:LMSP03010007 SM = sphingomyelin
C24:1 GlcCer Metabolite lipidmaps:LMSP0501AA08
C24:1DH SM Metabolite lipidmaps:LMSP03010023 SM = sphingomyelin
C24:1DH GlcCer Metabolite lipidmaps:LMSP0501AA22
C24:1DH-Cer Metabolite lipidmaps:LMSP02020011
C24:1 Cer Metabolite lipidmaps:LMSP02010009
C26:1 SM Metabolite lipidmaps:LMSP03010009 SM = sphingomyelin
C26:1 GlcCer Metabolite lipidmaps:LMSP0501AA10
C26:1DH SM Metabolite lipidmaps:LMSP03010025 SM = sphingomyelin
C26:1DH GlcCer Metabolite lipidmaps:LMSP0501AA24
C26:1DH-Cer Metabolite lipidmaps:LMSP02020013
C26:1 Cer Metabolite lipidmaps:LMSP02010010
C26 SM Metabolite lipidmaps:LMSP03010010 SM = sphingomyelin
C26 GlcCer Metabolite lipidmaps:LMSP0501AA11
C26DH SM Metabolite lipidmaps:LMSP03010026 SM = sphingomyelin
C26DH GlcCer Metabolite lipidmaps:LMSP0501AA25
C26DH-Cer Metabolite lipidmaps:LMSP02020014
C26 Cer Metabolite lipidmaps:LMSP02010011
Ppap2a GeneProduct uniprot:O14494 No homologues found for original id L:19012
CERK Protein ensembl:ENSG00000100422 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:223753
SGPP1 Protein ensembl:ENSG00000126821 Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:Q9JI99
ASAH1 Protein ensembl:ENSG00000104763 Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:Q9WV54
SGMS1 Protein ensembl:ENSG00000198964 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:208449
SPHK2 Protein ensembl:ENSG00000063176 Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:Q9JIA7
SGPL1 Protein ensembl:ENSG00000166224 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:20397
UGCG Protein ensembl:ENSG00000148154 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:22234
SPTLC1 Protein ensembl:ENSG00000090054 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:268656
SPHK1 Protein ensembl:ENSG00000176170 Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:Q8CI15
DEGS1 Protein ensembl:ENSG00000143753 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:13244
KDSR Protein ensembl:ENSG00000119537 AKA Fvt1
Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:Q6GV12
SPTLC2 Protein ensembl:ENSG00000100596 Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:P97363
CERS4 Protein ensembl:ENSG00000090661 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:67260
CERS5 Protein ensembl:ENSG00000139624 AKA Lass5
Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:Q9D6K9
CERS6 Protein ensembl:ENSG00000172292 AKA Lass6
Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:Q8C172
SMPD1 Protein ensembl:ENSG00000166311 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:20597
DEGS2 Protein ensembl:ENSG00000168350 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:70059
SGMS2 Protein ensembl:ENSG00000164023 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:74442
PLPP3 Protein ensembl:ENSG00000162407 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:67916
Ppap2c Protein uniprot:O43688
UGT8 Protein ensembl:ENSG00000174607 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:22239
CERS1 Protein ensembl:ENSG00000223802 Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:P27545
CERS2 Protein ensembl:ENSG00000143418 Original LipidMaps annotation
Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:76893
CERS3 Protein ensembl:ENSG00000154227 Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:Q1A3B0
SGPP2 Protein ensembl:ENSG00000163082 Homology Mapping from Mus musculus to Homo sapiens: Original ID = S:Q810K3
CERS2 Protein ensembl:ENSG00000143418 Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:76893
CERS4 Protein ensembl:ENSG00000090661 Protein found in literature (not in original LipidMapsPW)
Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:67260

References

  1. Characterization of murine sphingosine-1-phosphate phosphohydrolase. Le Stunff H, Peterson C, Thornton R, Milstien S, Mandala SM, Spiegel S. J Biol Chem. 2002 Mar 15;277(11):8920–7. PubMed Europe PMC Scholia
  2. De novo sphingolipid biosynthesis: a necessary, but dangerous, pathway. Merrill AH Jr. J Biol Chem. 2002 Jul 19;277(29):25843–6. PubMed Europe PMC Scholia
  3. Mammalian Lass6 and its related family members regulate synthesis of specific ceramides. Mizutani Y, Kihara A, Igarashi Y. Biochem J. 2005 Aug 15;390(Pt 1):263–71. PubMed Europe PMC Scholia
  4. LASS5 is a bona fide dihydroceramide synthase that selectively utilizes palmitoyl-CoA as acyl donor. Lahiri S, Futerman AH. J Biol Chem. 2005 Oct 7;280(40):33735–8. PubMed Europe PMC Scholia
  5. Kinetic characterization of mammalian ceramide synthases: determination of K(m) values towards sphinganine. Lahiri S, Lee H, Mesicek J, Fuks Z, Haimovitz-Friedman A, Kolesnick RN, et al. FEBS Lett. 2007 Nov 13;581(27):5289–94. PubMed Europe PMC Scholia
  6. A mouse macrophage lipidome. Dennis EA, Deems RA, Harkewicz R, Quehenberger O, Brown HA, Milne SB, et al. J Biol Chem. 2010 Dec 17;285(51):39976–85. PubMed Europe PMC Scholia
  7. Ceramide Synthase 5 Is Essential to Maintain C16:0-Ceramide Pools and Contributes to the Development of Diet-induced Obesity. Gosejacob D, Jäger PS, Vom Dorp K, Frejno M, Carstensen AC, Köhnke M, et al. J Biol Chem. 2016 Mar 25;291(13):6989–7003. PubMed Europe PMC Scholia