Pyrimidine metabolism and related diseases (WP4225)
Homo sapiens
Overview of pyrimidine metabolism and related diseases
Authors
Roel Hacking , Denise Slenter , Egon Willighagen , Martina Summer-Kutmon , Irene Hemel , Friederike Ehrhart , Finterly Hu , and Eric WeitzActivity
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Cited In
- Heterogeneity of Lipid and Protein Cartilage Profiles Associated with Human Osteoarthritis with or without Type 2 Diabetes Mellitus (2021).
- Identification of high‐dimensional omics‐derived predictors for tumor growth dynamics using machine learning and pharmacometric modeling (2021).
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Organisms
Homo sapiensCommunities
Inherited Metabolic Disorders (IMD) Pathways Rare DiseasesAnnotations
Disease Ontology
pyrimidine metabolic disorder dihydropyrimidine dehydrogenase deficiency orotic aciduriaPathway Ontology
dihydropyrimidine dehydrogenase deficiency pathway beta-ureidopropionase deficiency pathway orotic aciduria 1 pathway pyrimidine metabolic pathway inborn error of purine-pyrimidine metabolism pathway disease pathwayLabel | Type | Compact URI | Comment |
---|---|---|---|
(S)-Beta-aminoisobutyrate | Metabolite | chebi:57731 | aka (R)-3-amino-2-methylpropanoate; myokine, β-aminoisobutyric acid (BAIBA); D form of β-aminoisobutyric acid (D-BAIBA)Zwitterion needed for conversion to take place |
Glutamine | Metabolite | chebi:58359 | Zwitterion needed for conversion to take place |
Orotate | Metabolite | chebi:30839 | |
UTP | Metabolite | chebi:46398 | (4-) charge needed for conversion to take place |
Carbamoyl-phosphate | Metabolite | chebi:58228 | (2-) charge needed for conversion to take place |
L-Valine | Metabolite | chebi:57762 | |
CoQ10 | Metabolite | chebi:46245 | |
Thymidine | Metabolite | chebi:17748 | |
OMP | Metabolite | chebi:57538 | Orotidylic acid (3-) charge needed for conversion to take place |
Acetyl-CoA | Metabolite | chebi:15351 | |
Aspartate | Metabolite | chebi:29991 | (1-) charge needed for conversion to take place |
Carbamoylaspartate | Metabolite | chebi:32814 | aka N-carbamoyl-L-aspartate(2-) charge needed for conversion to take place |
CDP | Metabolite | chebi:58069 | (3-) charge needed for conversion to take place |
N-Carbamoyl-beta-alanine | Metabolite | chebi:11892 | aka 3-(carbamoylamino)propanoate |
Uridine | Metabolite | chebi:16704 | |
CoQ10 - H2 (reduced) | Metabolite | chebi:64183 | |
Ornithine | Metabolite | chebi:46911 | (1) charge needed for conversion to take place |
Dihydrouracil | Metabolite | chebi:15901 | |
Cytidine | Metabolite | chebi:17562 | |
Dihydrothymine | Metabolite | chebi:27468 | |
UMP | Metabolite | chebi:57865 | (2-) charge needed for conversion to take place |
Citrulline | Metabolite | chebi:57743 | Zwitterion needed for conversion to take place |
dUDP | Metabolite | chebi:60471 | (3-) charge needed for conversion to take place |
Malonate semialdehyde | Metabolite | chebi:57700 | AKA Beta-ketopropionateAnnotated without knowledge of R/S configuration |
dUMP | Metabolite | chebi:246422 | (2-) charge needed for conversion to take place |
D-methylmalonatesemialdehyde | Metabolite | chebi:141212 | methylmalonate semialdehyde aka 2-Methyl-3-oxopropanoic acid aka 2-methyl-3-oxopropanoateD configuration == R-annotation in ChEBI |
Uracil | Metabolite | chebi:17568 | |
CMP | Metabolite | chebi:60377 | (2-) charge needed for conversion to take place |
Orotidine | Metabolite | chebi:25722 | |
N-Carbamyl-beta-aminoisobutyric acid | Metabolite | chebi:74414 | aka 3-(carbamoylamino)-2-methylpropanoate(1-) charge needed for conversion to take place |
CTP | Metabolite | chebi:37563 | (4-) charge needed for conversion to take place |
Beta-alanine | Metabolite | chebi:57966 | Zwitterion needed for conversion to take place |
PRPP | Metabolite | chebi:17111 | |
UDP | Metabolite | chebi:58223 | (3-) charge needed for conversion to take place |
Thymine | Metabolite | chebi:17821 | |
HCO3- | Metabolite | chebi:17544 | |
2-Deoxyuridine | Metabolite | chebi:16450 | |
dTMP | Metabolite | chebi:63528 | (2-) charge needed for conversion to take place |
Dihydroorotate | Metabolite | chebi:30864 | |
+ PRPP | Metabolite | chebi:17111 | |
Glutamate | Metabolite | chebi:29985 | (1-) charge needed for conversion to take place |
NH4+ | Metabolite | chebi:28938 | |
L-BAIBA | Metabolite | chebi:58655 | L form of β-aminoisobutyric acid (BAIBA) |
L-methylmalonatesemialdehyde | Metabolite | chebi:62413 | methylmalonate semialdehyde aka 2-Methyl-3-oxopropanoic acid aka 2-methyl-3-oxopropanoateL configuration == S-annotation in ChEBI |
Propionyl-CoA | Metabolite | chebi:57392 | |
UMPS-complex | GeneProduct | uniprot:P11172 | |
CAD-complex | GeneProduct | uniprot:P27708 | |
RRM1 | Protein | uniprot:P23921 | |
RRM2 | Protein | uniprot:P31350 | |
MMSDH | Protein | uniprot:Q02252 | |
RRM2B | Protein | uniprot:Q7LG56 | |
TK2 | Protein | uniprot:O00142 | |
OTC | Protein | uniprot:P00480 | |
DPD | Protein | uniprot:Q12882 | AKA DPYD |
DHO | Protein | eccode:3.5.2.3 | |
GLS2 | Protein | uniprot:Q9UI32 | |
UMPH1 | Protein | uniprot:Q9H0P0 | aka P5N1Enzymes and reactions added with info from https://www.omim.org/entry/606224 |
UP | Protein | uniprot:Q9UBR1 | aka UPB1 |
CPS1 | Protein | uniprot:P31327 | |
TS | Protein | uniprot:P04818 | |
OPRT | Protein | eccode:2.4.2.10 | |
OMPDC | Protein | eccode:4.1.1.23 | |
AGXT2 | Protein | uniprot:Q9BYV1 | |
TP | Protein | uniprot:P19971 | |
DHODH | Protein | uniprot:Q02127 | |
ACT | Protein | eccode:2.1.3.2 | |
beta-alanine-pyruvate transaminase | Protein | eccode:2.6.1.18 | |
CPS2 | Protein | eccode:6.3.5.5 | |
RR | Protein | eccode:1.17.4.1 | |
DHP | Protein | uniprot:Q14117 | AKA DPYS |
ACT | Protein | kegg.genes:2.1.3.2 | |
UMPH2 | Protein | uniprot:Q8TCD5 | aka NT5CEnzymes and reactions added with info from https://www.omim.org/entry/606224 |
UMPH | Protein | eccode:3.1.3.5 | aka P5NEnzymes and reactions added with info from https://www.omim.org/entry/606224 |
ABAT | Protein | uniprot:P80404 |
References
- Physician’s Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases [Internet]. Blau N, Duran M, Gibson KM, Dionisi-Vici C. Springer; 2014. 0 p. Available from: https://books.google.com/books/about/Physician_s_Guide_to_the_Diagnosis_Treat.html?hl=&id=wJRBnwEACAAJ OpenLibrary Worldcat
- Pyridoxine-responsive hyper-beta-alaninemia associated with Cohen’s syndrome. Higgins JJ, Kaneski CR, Bernardini I, Brady RO, Barton NW. Neurology. 1994 Sep;44(9):1728–32. PubMed Europe PMC Scholia
- Mammalian methylmalonate-semialdehyde dehydrogenase. Kedishvili NY, Goodwin GW, Popov KM, Harris RA. Methods Enzymol. 2000;324:207–18. PubMed Europe PMC Scholia
- Dihydropyrimidine dehydrogenase and the efficacy and toxicity of 5-fluorouracil. van Kuilenburg ABP. Eur J Cancer. 2004 May;40(7):939–50. PubMed Europe PMC Scholia
- Characterization of enzymatic properties of human ribonucleotide reductase holoenzyme reconstituted in vitro from hRRM1, hRRM2, and p53R2 subunits. Qiu W, Zhou B, Darwish D, Shao J, Yen Y. Biochem Biophys Res Commun. 2006 Feb 10;340(2):428–34. PubMed Europe PMC Scholia
- Clinical findings and a therapeutic trial in the first patient with beta-ureidopropionase deficiency. Assmann B, Göhlich G, Baethmann M, Wevers RA, Van Gennip AH, Van Kuilenburg ABP, et al. Neuropediatrics. 2006 Feb;37(1):20–5. PubMed Europe PMC Scholia
- Inborn errors of pyrimidine metabolism: clinical update and therapy. Balasubramaniam S, Duley JA, Christodoulou J. J Inherit Metab Dis. 2014 Sep;37(5):687–98. PubMed Europe PMC Scholia
- Beta-Aminoisobutyric Acid as a Novel Regulator of Carbohydrate and Lipid Metabolism. Tanianskii DA, Jarzebska N, Birkenfeld AL, O’Sullivan JF, Rodionov RN. Nutrients. 2019 Feb 28;11(3):524. PubMed Europe PMC Scholia
- Mevalonate Pathway Provides Ubiquinone to Maintain Pyrimidine Synthesis and Survival in p53-Deficient Cancer Cells Exposed to Metabolic Stress. Kaymak I, Maier CR, Schmitz W, Campbell AD, Dankworth B, Ade CP, et al. Cancer Res. 2020 Jan 15;80(2):189–203. PubMed Europe PMC Scholia