Nuclear receptors in lipid metabolism and toxicity (WP981)

Bos taurus

Nuclear receptors are transcription factors that are activated upon binding to its ligands. Initially, they had been classified as classic endocrine nuclear hormone receptors and orphan receptors. However, further studies have led to the identification of lipid ligands for some of these adopted orphan receptors, which are responsible for lipid metabolism, storage or elimination. One of the characteristics of these receptors is that they act by forming heterodimers with retinoid X receptor (RXR). The receptors include peroxisome proliferators-Activated receptors (PPARs) for fatty acids, liver X receptor (LCR) for oxysterols, Farnesoid X receptors (FXR) for bile acids and steroid xenobiotic receptor/X receptor (SXR/PXR or Nsil2) for xenobiotics. Other orphan receptors also require RXR for its functions are vitamin D receptor (VDR) for vitamin D and retinoic acid receptor (RAR) for retinoid acids, although these receptors are not involved in lipid metabolism. Upon binding to various ligands, three classes of proteins are synthesized including lipid binding proteins, the ATP-binding cassette (ABC) transporters and cytochrome P450 member proteins which catalyzes lipid anabolism, metabolism and elimination. In addition to lipid metabolism, some members of the cytochrome P450 family genes are responsible for activation of procarcinogens, detoxification of environmental toxins and metabolism of drugs and xenobiotics. In particular, CAR, Nsil2 and recently identified VDR are important in up-regulation of these cytochromes. Of all the human cytochrome P450 genes, only a few CYP1A2, CYP2C9, CYP2C19, CYP2D6, CYP2E1 and CYP3A4 account for most toxicity effects, specifically CYP3A is responsible for clearing approximately half of the clinically prescribed drugs. For instance, acetaminophen, one of the most commonly used drug, is toxic in high doses due to the activation of CAR and the drugs subsequent conversion to acetyl-p-benzoquinone imine (NAPQI) by CYP1A2, CYP2E1 and CYP3A.

Authors

Kristina Hanspers , Daniela Digles , Alex Pico , Martina Summer-Kutmon , Egon Willighagen , and Eric Weitz

Activity

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Organisms

Bos taurus

Communities

Annotations

Pathway Ontology

lipid metabolic pathway

Participants

Label Type Compact URI Comment
Xenobiotics Metabolite chebi:35703
Fatty Acids Metabolite chebi:35366
Steroids Metabolite chebi:35341
Cholesterol Metabolite cas:57-88-5
7-DehydroCholesterol Metabolite cas:434-16-2
1,25-Dihydroxy-Vitamins D3 Metabolite chebi:17823
Bile Acids Metabolite chebi:3098
Retinoic acid Metabolite hmdb:HMDB0001852
Acetyl CoA Metabolite cas:72-89-9
Lanosterol Metabolite chebi:16521
Oxysterol Metabolite chebi:53030
Isoprenoids Metabolite chebi:24913
ABCA1 GeneProduct ensembl:ENSBTAG00000020661 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:19
CYP3A4 GeneProduct ensembl:ENSBTAG00000047379 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1576
PPARA GeneProduct ensembl:ENSBTAG00000008063 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5465
PPARG GeneProduct ensembl:ENSBTAG00000001333 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5468
NR1I2 GeneProduct ensembl:ENSBTAG00000019557 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8856
ABCB11 GeneProduct ensembl:ENSBTAG00000026885 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8647
RARA GeneProduct ensembl:ENSBTAG00000012500 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5914
CYP8B1 GeneProduct ensembl:ENSBTAG00000034106 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1582
CYP1A2 GeneProduct ensembl:ENSBTAG00000000085 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1544
ABCG5 GeneProduct ensembl:ENSBTAG00000016365 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:64240
ABCG1 GeneProduct ensembl:ENSBTAG00000021272 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9619
bta-mir-33b GeneProduct ensembl:ENSBTAG00000036437 HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000207839
bta-mir-33a GeneProduct ensembl:ENSBTAG00000029975 HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000207932
CYP2C9 GeneProduct ensembl:ENSBTAG00000020375 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1559
CYP26A1 GeneProduct ensembl:ENSBTAG00000021118 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1592
NR1I3 GeneProduct ensembl:ENSBTAG00000009215 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9970
VDR GeneProduct ensembl:ENSBTAG00000016414 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7421
CYP4A11 GeneProduct ensembl:ENSBTAG00000000229 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1579
CYP2B6 GeneProduct ensembl:ENSBTAG00000003871 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1555
CYP7A1 GeneProduct ensembl:ENSBTAG00000005287 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1581
RARB GeneProduct ensembl:ENSBTAG00000011518 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5915
CYP27B1 GeneProduct ensembl:ENSBTAG00000016906 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1594
RARG GeneProduct ensembl:ENSBTAG00000007592 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5916
CYP4B1 GeneProduct ensembl:ENSBTAG00000011976 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1580
ABCB4 GeneProduct ensembl:ENSBTAG00000005653 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5244
CYP24A1 GeneProduct ensembl:ENSBTAG00000002765 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1591
NR1H3 GeneProduct ensembl:ENSBTAG00000010681 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:10062
NR1H4 GeneProduct ensembl:ENSBTAG00000013596 Farnesoid X-activated receptor
HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9971
CYP2E1 GeneProduct ensembl:ENSBTAG00000018365 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1571
ABCD2 GeneProduct ensembl:ENSBTAG00000038043 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:225
PPARD GeneProduct ensembl:ENSBTAG00000017542 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5467
ABCD3 GeneProduct ensembl:ENSBTAG00000009698 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5825
ABCB1 GeneProduct ensembl:ENSBTAG00000005997 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5243

References