COVID-19 adverse outcome pathway (WP4891)
Homo sapiens
Experimenting with links in line with bioinformatics analysis of COVID-19 genes and AOP knowledge. Work in progress!
Authors
Penny Nymark , Friederike Ehrhart , Egon Willighagen , Chris Evelo , and Eric WeitzActivity
Discuss this pathway
Check for ongoing discussions or start your own.
Cited In
- Identifying Drug-Induced Liver Injury Associated With Inflammation-Drug and Drug-Drug Interactions in Pharmacologic Treatments for COVID-19 by Bioinformatics and System Biology Analyses: The Role of Pregnane X Receptor (2022).
- Target and drug predictions for SARS-CoV-2 infection in hepatocellular carcinoma patients (2022).
- AMP5A modulates Toll-like receptors 7 and 8 single-stranded RNA immune responses in PMA-differentiated THP-1 and PBMC (2022).
- Identification of Robust Protein Associations With COVID-19 Disease Based on Five Clinical Studies (2022).
- Systematic Organization of COVID-19 Data Supported by the Adverse Outcome Pathway Framework (2021).
- Exploring the pharmacological mechanism of Duhuo Jisheng Decoction in treating intervertebral disc degeneration based on network pharmacology (2023).
- Identification of the Genetic Influence of SARS-CoV-2 Infections on IgA Nephropathy Based on Bioinformatics Method (2023).
- Identification of host genomic biomarkers from multiple transcriptomics datasets for diagnosis and therapies of SARS-CoV-2 infections (2023).
- Single-cell ‘omic profiles of human aortic endothelial cells in vitro and human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and response to activating perturbations (2024).
- Statistical and network analyses reveal mechanisms for the enhancement of macrophage immunity by manganese in Mycobacterium tuberculosis infection (2024).
- The differential expression of adipose tissue genes in short, medium and long-term periods after bariatric surgery (2024).
- Repurposing Astragalus Polysaccharide PG2 for Inhibiting ACE2 and SARS-CoV-2 Spike Syncytial Formation and Anti-Inflammatory Effects (2023).
Are you planning to include this pathway in your next publication? See How to Cite and add a link here to your paper once it's online.
Organisms
Homo sapiensCommunities
Adverse Outcome Pathways COVID-19Annotations
Disease Ontology
viral infectious disease COVID-19 pulmonary fibrosis severe acute respiratory syndromePathway Ontology
respiratory system disease pathway signaling pathwayLabel | Type | Compact URI | Comment |
---|---|---|---|
CCL3 | GeneProduct | ncbigene:6348 | |
TNF | GeneProduct | ncbigene:7124 | |
IL2 | GeneProduct | ncbigene:3558 | |
CSF3 | GeneProduct | ncbigene:1440 | |
IL8 | GeneProduct | ncbigene:3576 | |
CXCL10 | GeneProduct | ncbigene:3627 | |
IL6 | GeneProduct | ncbigene:3569 | |
IL7 | GeneProduct | ncbigene:3574 | |
IL1B | GeneProduct | ncbigene:3553 | |
CCL2 | GeneProduct | ncbigene:6347 | |
IL10 | GeneProduct | ncbigene:3586 | |
IL2RA | GeneProduct | ncbigene:3559 | |
AGT | GeneProduct | ncbigene:183 | |
TMPRSS2 | GeneProduct | ncbigene:7113 | |
ACE2 | GeneProduct | ncbigene:59272 |
References
- A novel angiotensin-converting enzyme-related carboxypeptidase (ACE2) converts angiotensin I to angiotensin 1-9. Donoghue M, Hsieh F, Baronas E, Godbout K, Gosselin M, Stagliano N, et al. Circ Res. 2000 Sep 1;87(5):E1-9. PubMed Europe PMC Scholia
- Nano-risk Science: application of toxicogenomics in an adverse outcome pathway framework for risk assessment of multi-walled carbon nanotubes. Labib S, Williams A, Yauk CL, Nikota JK, Wallin H, Vogel U, et al. Part Fibre Toxicol. 2016 Mar 15;13:15. PubMed Europe PMC Scholia
- A Data Fusion Pipeline for Generating and Enriching Adverse Outcome Pathway Descriptions. Nymark P, Rieswijk L, Ehrhart F, Jeliazkova N, Tsiliki G, Sarimveis H, et al. Toxicol Sci. 2018 Mar 1;162(1):264–75. PubMed Europe PMC Scholia