Primary carbon metabolism (WP2859)
Populus trichocarpa
This plant pathway represents the primary carbon metabolism in plants including Calvin cycle (WP2860) and Photosynthetic electron transport chain (WP2861)(chloroplast), Glycolysis (WP2862) (cytosol) and Krebs cycle (WP2863) (mitochondrion).
Authors
Anwesha Bohler , Sacha Bohler , Jonathan Mélius , Friederike Ehrhart , Eric Weitz , Egon Willighagen , Alex Pico , and Lars WillighagenActivity
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Organisms
Populus trichocarpaCommunities
Annotations
Pathway Ontology
classic metabolic pathway| Label | Type | Compact URI | Comment |
|---|---|---|---|
| fructose-1,6-bisphosphate | Metabolite | chebi:32966 | |
| fructose-6-phosphate | Metabolite | chebi:78697 | |
| dihydroxy-acetone phosphate | Metabolite | chebi:16108 | |
| carbonic acid | Metabolite | chebi:28976 | |
| carbon dioxide | Metabolite | chebi:16526 | |
| erythrose-4-phosphate | Metabolite | chebi:48153 | |
| xylulose-5-phosphate | Metabolite | chebi:16332 | |
| sedoheptulose-1,7-bisphosphate | Metabolite | chebi:17969 | |
| ADP | Metabolite | chebi:16761 | |
| ATP | Metabolite | chebi:15422 | |
| NADP+ | Metabolite | chebi:18009 | |
| NADPH | Metabolite | chebi:16474 | |
| 3-phosphoglycerate | Metabolite | chebi:17050 | |
| glyceraldehyde-3-phosphate | Metabolite | chebi:17050 | |
| ribose-5-phosphate | Metabolite | chebi:17050 | |
| ribulose-1,5-bisphosphate | Metabolite | chebi:17050 | |
| ribulose-5-phosphate | Metabolite | chebi:17050 | |
| pyruvate | Metabolite | chebi:15361 | |
| acetyl-CoA | Metabolite | chebi:15351 | |
| malate | Metabolite | chebi:15361 | |
| glucose | Metabolite | chebi:17234 | |
| sucrose | Metabolite | chebi:17992 | |
| citric acid | Metabolite | chebi:30769 | |
| cis-aconitic acid | Metabolite | chebi:32805 | |
| isocitric acid | Metabolite | chebi:30887 | |
| 2-oxoglutaric acid | Metabolite | chebi:30915 | |
| succinic acid | Metabolite | chebi:15741 | |
| succinyl-CoA | Metabolite | chebi:15380 | |
| fructose 1,6 Bisphosphate | Metabolite | chebi:28013 | |
| glyceraldehyde 3-phosphate | Metabolite | chebi:17138 | |
| 1,3-bisphosphoglycerate | Metabolite | kegg.compound:C00236 | |
| 3-phosphoglyceric acid | Metabolite | chebi:17050 | |
| 2-phosphoglyceric acid | Metabolite | chebi:24344 | |
| phosphoenolpyruvic acid | Metabolite | chebi:44897 | |
| oxaloacetic acid | Metabolite | chebi:30744 | |
| malic acid | Metabolite | chebi:6650 | |
| DHAP | Metabolite | chebi:16108 | |
| glucose-6-phosphate | Metabolite | chebi:14314 | |
| starch | Metabolite | chebi:28017 | |
| sedoheptulose-7-phosphate | Metabolite | chebi:15721 | |
| fumaric acid | Metabolite | chebi:18012 | |
| NAD+ | Metabolite | chebi:18009 | |
| NADH | Metabolite | chebi:16474 | |
| FAD+ | Metabolite | chebi:18009 | |
| FADH | Metabolite | chebi:16474 | |
| light harvesting complex I protein Lhca3 | Protein | uniprot:A9PK62 | |
| RuBisCO subunit binding | Protein | uniprot:B9HQD5 | |
| ribulose-5-phosphate-3-epimerase | Protein | uniprot:A9PIC8 | |
| ATPase beta | Protein | uniprot:Q8MCB3 | |
| fructose-1,6-bisphosphatase | Protein | uniprot:B9H7R7 | |
| RuBisCO activase | Protein | uniprot:A9PFQ2 | |
| ferredoxin NADP + reductase | Protein | uniprot:P00455 | |
| sedoheptulose-1,7-bisphosphatase | Protein | eccode:3.1.3.37 | |
| RuBisCO | Protein | uniprot:B9GXY0 | |
| light-harvesting complex II protein Lhcb1 | Protein | uniprot:A9PJK6 | |
| transketolase | Protein | uniprot:B9GPE7 | |
| carbonic anhydrase | Protein | uniprot:Q41088 | |
| PSI reaction center subunit II | Protein | uniprot:A9PJR8 | |
| O2-evolving Enhancer | Protein | uniprot:A9PFR3 | |
| fructose-1,6-bisphosphatase | Protein | eccode:3.1.3.11 | |
| NADP malic enzyme | Protein | uniprot:B9ILT5 | |
| NADP MDH | Protein | uniprot:A9P8R3 | |
| light-harvesting complex I protein Lhca1 | Protein | uniprot:A9PJ58 | |
| glyceraldehyde-3-phosphate dehydrogenase | Protein | uniprot:Q9SNX8 | |
| O2-evolving Enhancer 1 | Protein | uniprot:B3VY32 | |
| O2-evolving Enhancer 2 | Protein | uniprot:A9PHM0 | |
| phosphoribulokinase | Protein | uniprot:B9GZT5 | |
| triose phosphate isomerase | Protein | uniprot:A9PE68 | |
| phosphoglycerate kinase | Protein | uniprot:B9HY29 | |
| PSI reaction center subunit III | Protein | ensembl:POPTR_0002s25510 | |
| aldolase | Protein | uniprot:A9PJC9 | |
| fructose-1,6-bisphosphate aldolase | Protein | uniprot:A9PJC9 | |
| ribulose-5-phosphate epimerase | Protein | eccode:5.3.1.6 |
References
- Plant Physiology [Internet]. Taiz L, Zeiger E. Sinauer Associates Incorporated; 2002. 690 p. Available from: https://books.google.com/books/about/Plant_Physiology.html?hl=&id=u_BOQgAACAAJ OpenLibrary Worldcat
- Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves. Bohler S, Sergeant K, Lefèvre I, Jolivet Y, Hoffmann L, Renaut J, et al. Tree Physiol. 2010 Nov;30(11):1415–32. PubMed Europe PMC Scholia