Primary carbon metabolism (WP2859)

Populus trichocarpa

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This plant pathway represents the primary carbon metabolism in plants including Calvin cycle (WP2860) and Photosynthetic electron transport chain (WP2861)(chloroplast), Glycolysis (WP2862) (cytosol) and Krebs cycle (WP2863) (mitochondrion).

Authors

Anwesha Bohler , Sacha Bohler , Jonathan Mélius , Friederike Ehrhart , Eric Weitz , Egon Willighagen , Alex Pico , and Lars Willighagen

Activity

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Cited In

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Organisms

Populus trichocarpa

Communities

Annotations

Pathway Ontology

classic metabolic pathway

Participants

Label Type Compact URI Comment
fructose-1,6-bisphosphate Metabolite chebi:32966
fructose-6-phosphate Metabolite chebi:78697
dihydroxy-acetone phosphate Metabolite chebi:16108
carbonic acid Metabolite chebi:28976
carbon dioxide Metabolite chebi:16526
erythrose-4-phosphate Metabolite chebi:48153
xylulose-5-phosphate Metabolite chebi:16332
sedoheptulose-1,7-bisphosphate Metabolite chebi:17969
ADP Metabolite chebi:16761
ATP Metabolite chebi:15422
NADP+ Metabolite chebi:18009
NADPH Metabolite chebi:16474
3-phosphoglycerate Metabolite chebi:17050
glyceraldehyde-3-phosphate Metabolite chebi:17050
ribose-5-phosphate Metabolite chebi:17050
ribulose-1,5-bisphosphate Metabolite chebi:17050
ribulose-5-phosphate Metabolite chebi:17050
pyruvate Metabolite chebi:15361
acetyl-CoA Metabolite chebi:15351
malate Metabolite chebi:15361
glucose Metabolite chebi:17234
sucrose Metabolite chebi:17992
fructose-6-phosphate Metabolite chebi:78697
citric acid Metabolite chebi:30769
cis-aconitic acid Metabolite chebi:32805
isocitric acid Metabolite chebi:30887
2-oxoglutaric acid Metabolite chebi:30915
succinic acid Metabolite chebi:15741
succinyl-CoA Metabolite chebi:15380
fructose 1,6 Bisphosphate Metabolite chebi:28013
glyceraldehyde 3-phosphate Metabolite chebi:17138
1,3-bisphosphoglycerate Metabolite kegg.compound:C00236
3-phosphoglyceric acid Metabolite chebi:17050
2-phosphoglyceric acid Metabolite chebi:24344
phosphoenolpyruvic acid Metabolite chebi:44897
pyruvate Metabolite chebi:15361
oxaloacetic acid Metabolite chebi:30744
malic acid Metabolite chebi:6650
oxaloacetic acid Metabolite chebi:30744
DHAP Metabolite chebi:16108
glucose-6-phosphate Metabolite chebi:14314
starch Metabolite chebi:28017
1,3-bisphosphoglycerate Metabolite kegg.compound:C00236
sedoheptulose-7-phosphate Metabolite chebi:15721
ADP Metabolite chebi:16761
ATP Metabolite chebi:15422
NADP+ Metabolite chebi:18009
NADPH Metabolite chebi:16474
ADP Metabolite chebi:16761
ATP Metabolite chebi:15422
fumaric acid Metabolite chebi:18012
NAD+ Metabolite chebi:18009
NADH Metabolite chebi:16474
NAD+ Metabolite chebi:18009
NADH Metabolite chebi:16474
NAD+ Metabolite chebi:18009
NADH Metabolite chebi:16474
NAD+ Metabolite chebi:18009
NADH Metabolite chebi:16474
ADP Metabolite chebi:16761
ATP Metabolite chebi:15422
FAD+ Metabolite chebi:18009
FADH Metabolite chebi:16474
ADP Metabolite chebi:16761
ATP Metabolite chebi:15422
ADP Metabolite chebi:16761
ATP Metabolite chebi:15422
ADP Metabolite chebi:16761
ATP Metabolite chebi:15422
NAD+ Metabolite chebi:18009
NADH Metabolite chebi:16474
ADP Metabolite chebi:16761
ATP Metabolite chebi:15422
light harvesting complex I protein Lhca3 Protein uniprot:A9PK62
RuBisCO subunit binding Protein uniprot:B9HQD5
ribulose-5-phosphate-3-epimerase Protein uniprot:A9PIC8
ATPase beta Protein uniprot:Q8MCB3
fructose-1,6-bisphosphatase Protein uniprot:B9H7R7
RuBisCO activase Protein uniprot:A9PFQ2
ferredoxin NADP + reductase Protein uniprot:P00455
sedoheptulose-1,7-bisphosphatase Protein eccode:3.1.3.37
RuBisCO Protein uniprot:B9GXY0
light-harvesting complex II protein Lhcb1 Protein uniprot:A9PJK6
transketolase Protein uniprot:B9GPE7
carbonic anhydrase Protein uniprot:Q41088
PSI reaction center subunit II Protein uniprot:A9PJR8
O2-evolving Enhancer Protein uniprot:A9PFR3
fructose-1,6-bisphosphatase Protein eccode:3.1.3.11
NADP malic enzyme Protein uniprot:B9ILT5
NADP MDH Protein uniprot:A9P8R3
light-harvesting complex I protein Lhca1 Protein uniprot:A9PJ58
glyceraldehyde-3-phosphate dehydrogenase Protein uniprot:Q9SNX8
O2-evolving Enhancer 1 Protein uniprot:B3VY32
O2-evolving Enhancer 2 Protein uniprot:A9PHM0
phosphoribulokinase Protein uniprot:B9GZT5
triose phosphate isomerase Protein uniprot:A9PE68
phosphoglycerate kinase Protein uniprot:B9HY29
PSI reaction center subunit III Protein ensembl:POPTR_0002s25510
aldolase Protein uniprot:A9PJC9
fructose-1,6-bisphosphate aldolase Protein uniprot:A9PJC9
glyceraldehyde-3-phosphate dehydrogenase Protein uniprot:Q9SNX8
transketolase Protein uniprot:B9GPE7
aldolase Protein uniprot:A9PJC9
ribulose-5-phosphate epimerase Protein eccode:5.3.1.6

References

  1. Plant Physiology [Internet]. Taiz L, Zeiger E. Sinauer Associates Incorporated; 2002. 690 p. Available from: https://books.google.com/books/about/Plant_Physiology.html?hl=&id=u_BOQgAACAAJ OpenLibrary Worldcat
  2. Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves. Bohler S, Sergeant K, Lefèvre I, Jolivet Y, Hoffmann L, Renaut J, et al. Tree Physiol. 2010 Nov;30(11):1415–32. PubMed Europe PMC Scholia