Superpathway polyamine biosynthesis (WP290)

Saccharomyces cerevisiae

In S. cerevisiae, the biosynthesis of putrescine, spermidine, and spermine begins with two intermediates from amino acid metabolism: ornithine, an intermediate of arginine biosynthesis and degradation, and S-adenosylmethionine (AdoMet), a metabolite of methionine and a ubiquitous methyl group donor for many biological reactions. At the start of the pathway, ornithine is decarboxylated to putrescine by ornithine decarboxylase (Spe1p) while S-adenosylmethionine decarboxylase (Spe2p) decarboxylates AdoMet. Spermidine synthase (Spe3p) then catalyzes the transfer of an aminopropyl group from decarboxylated AdoMet to putrescine, converting the two substrates to 5-methylthioadenosine (MTA) and spermidine, respectively. In an analogous reaction, spermidine can go on to react with decarboxylated AdoMet via spermine synthase (Spe4p) to yield spermine and another molecule of MTA. Spermidine but not spermine is essential for growth in S. cerevisiae. MTA, a major byproduct of the polyamine biosynthesis pathway, is also the principal substrate for the methionine salvage pathway. The methionine salvage pathway recycles MTA produced during polyamine biosynthesis or other cellular processes back into methionine. In S. cerevisiae, the polyamine biosynthesis pathway and the methionine salvage pathway together are estimated to account for 11-19% of the methionine used by a methionine auxotroph grown on limiting methionine. Description adapted from https://pathway.yeastgenome.org/.

Authors

Meredith Braymer , Kristina Hanspers , Daniela Digles , Egon Willighagen , and Eric Weitz

Activity

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Organisms

Saccharomyces cerevisiae

Communities

Annotations

Pathway Ontology

biogenic amines and polyamines metabolic pathway classic metabolic pathway

Participants

Label Type Compact URI Comment
L-ornithine Metabolite cas:70-26-8
spermine Metabolite cas:71-44-3
spermidine Metabolite cas:124-20-9
5'-methylthioadenosine Metabolite cas:2457-80-9
S-adenosyl 3-(methylsulfanyl)propylamine Metabolite chebi:57443
putrescine Metabolite cas:110-60-1
H+ Metabolite chebi:15378
CO2 Metabolite chebi:16526
S-adenosyl-L-methionine Metabolite chebi:59789
SPE4 GeneProduct sgd:S000004136
SPE3 GeneProduct sgd:S000006273
SPE2 GeneProduct sgd:S000005412
SPE1 GeneProduct sgd:S000001667

References

  1. URL: https://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=PATHWAY&object=POLYAMSYN-YEAST-PWY