Glycine biosynthesis (WP261)

Saccharomyces cerevisiae

The proteinogenic amino acid glycine can biosynthesized via several different pathways. The main pathway in most organisms is the production of glycine from L-serine via EC 2.1.2.1, glycine hydroxymethyltransferase. Eukaryotic organisms have both a cytosolic enzyme (SHMT2) and a mitochondrial enzyme (SHMT1) (see glycine biosynthesis I). The two isoforms were reported to work in opposite directions depending on the culture conditions. In a third pathway glycine is formed from glyoxylate, a product of the glyoxylate cycle, by the enzyme EC 2.6.1.44, alanine—glyoxylate transaminase (see glycine biosynthesis III). And finally, glycine can also be formed from L-threonine by the action of EC 4.1.2.48, low-specificity L-threonine aldolase (see glycine biosynthesis IV). Description adapted from https://pathway.yeastgenome.org/.

Authors

Jessica Heckman , Christine Chichester , Egon Willighagen , and Kristina Hanspers

Activity

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Organisms

Saccharomyces cerevisiae

Communities

Annotations

Pathway Ontology

classic metabolic pathway glycine biosynthetic pathway

Participants

Label Type Compact URI Comment
glyoxylate Metabolite chebi:36655
L-serine Metabolite cas:56-45-1
5,10-methylene-THF Metabolite cas:31690-11-6
THF Metabolite kegg.compound:C03541
H2O Metabolite pubchem.compound:962
pyruvate Metabolite pubchem.compound:107735
L-glycine Metabolite cas:56-40-6
L-threonine Metabolite cas:72-19-5
acetaldehyde Metabolite cas:75-07-0
L-alanine Metabolite chebi:57972
AGX1 GeneProduct sgd:S000001864
SHM1 GeneProduct sgd:S000000467
SHM2 GeneProduct sgd:S000004048
GLY1 GeneProduct sgd:S000000772

References