Glycine biosynthesis (WP261)
Saccharomyces cerevisiae
The proteinogenic amino acid glycine can biosynthesized via several different pathways. The main pathway in most organisms is the production of glycine from L-serine via EC 2.1.2.1, glycine hydroxymethyltransferase. Eukaryotic organisms have both a cytosolic enzyme (SHMT2) and a mitochondrial enzyme (SHMT1) (see glycine biosynthesis I). The two isoforms were reported to work in opposite directions depending on the culture conditions. In a third pathway glycine is formed from glyoxylate, a product of the glyoxylate cycle, by the enzyme EC 2.6.1.44, alanine—glyoxylate transaminase (see glycine biosynthesis III). And finally, glycine can also be formed from L-threonine by the action of EC 4.1.2.48, low-specificity L-threonine aldolase (see glycine biosynthesis IV). Description adapted from https://pathway.yeastgenome.org/.
Authors
Jessica Heckman , Christine Chichester , Egon Willighagen , and Kristina HanspersActivity
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Organisms
Saccharomyces cerevisiaeCommunities
Annotations
Pathway Ontology
classic metabolic pathway glycine biosynthetic pathwayLabel | Type | Compact URI | Comment |
---|---|---|---|
glyoxylate | Metabolite | chebi:36655 | |
L-serine | Metabolite | cas:56-45-1 | |
5,10-methylene-THF | Metabolite | cas:31690-11-6 | |
THF | Metabolite | kegg.compound:C03541 | |
H2O | Metabolite | pubchem.compound:962 | |
pyruvate | Metabolite | pubchem.compound:107735 | |
L-glycine | Metabolite | cas:56-40-6 | |
L-threonine | Metabolite | cas:72-19-5 | |
acetaldehyde | Metabolite | cas:75-07-0 | |
L-alanine | Metabolite | chebi:57972 | |
AGX1 | GeneProduct | sgd:S000001864 | |
SHM1 | GeneProduct | sgd:S000000467 | |
SHM2 | GeneProduct | sgd:S000004048 | |
GLY1 | GeneProduct | sgd:S000000772 |