mRNA Processing (WP1142)
Canis familiaris
This process describes the conversion of precursor messenger RNA into mature messenger RNA (mRNA). The pre-mRNA molecule undergoes three main modifications. These modifications are 5' capping, 3' polyadenylation, and RNA splicing, which occur in the cell nucleus before the RNA is translated. 5' Capping: Capping of the pre-mRNA involves the addition of 7-methylguanosine (m7G) to the 5' end. The cap protects the 5' end of the primary RNA transcript from attack by ribonucleases that have specificity to the 3'5' phosphodiester bonds. 3' Processing: The pre-mRNA processing at the 3' end of the RNA molecule involves cleavage of its 3' end and then the addition of about 200 adenine residues to form a poly(A) tail. As the poly(A) tails is synthesised, it binds multiple copies of poly(A) binding protein, which protects the 3'end from ribonuclease digestion. Splicing: RNA splicing is the process by which introns, regions of RNA that do not code for protein, are removed from the pre-mRNA and the remaining exons connected to re-form a single continuous molecule. Description adapted from Wikipedia: http://en.wikipedia.org/wiki/Post-transcriptional_modification Pathway adapted from http://www.reactome.org.
Authors
Kristina Hanspers , Daniela Digles , Martina Summer-Kutmon , and Alex PicoActivity
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Organisms
Canis familiarisCommunities
Annotations
Pathway Ontology
spliceosome pathway transcription pathwayLabel | Type | Compact URI | Comment |
---|---|---|---|
GMP | Metabolite | cas:85-32-5 | |
ATP | Metabolite | cas:1927-31-7 | |
PRPF4 | GeneProduct | ensembl:ENSCAFG00000003224 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:9128 |
SNRPA1 | GeneProduct | ensembl:ENSCAFG00000010564 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6627 |
RBM17 | GeneProduct | ensembl:ENSCAFG00000005206 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:84991 |
SNRPD3 | GeneProduct | ensembl:ENSCAFG00000013864 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6634 |
NCBP2 | GeneProduct | ensembl:ENSCAFG00000013100 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:22916 |
RNGTT | GeneProduct | ensembl:ENSCAFG00000003089 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8732 |
SNRPD1 | GeneProduct | ensembl:ENSCAFG00000018247 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6632 |
SF3A2 | GeneProduct | ensembl:ENSCAFG00000019414 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8175 |
SNRPD2 | GeneProduct | ensembl:ENSCAFG00000004403 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6633 |
XRN2 | GeneProduct | ensembl:ENSCAFG00000005185 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:22803 |
DHX16 | GeneProduct | ensembl:ENSCAFG00000000427 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8449 |
HNRNPM | GeneProduct | ensembl:ENSCAFG00000018524 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:4670 |
HNRPA1 | GeneProduct | ensembl:ENSCAFG00000017316 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3178 |
CELF2 | GeneProduct | ensembl:ENSCAFG00000004973 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10659 |
SPOP | GeneProduct | ensembl:ENSCAFG00000016942 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8405 |
HNRNPA2B1 | GeneProduct | ensembl:ENSCAFG00000002885 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3181 |
PHF5A | GeneProduct | ensembl:ENSCAFG00000001090 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:84844 |
SF3B5 | GeneProduct | ensembl:ENSCAFG00000032495 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:83443 |
HNRNPR | GeneProduct | ensembl:ENSCAFG00000013308 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10236 |
PRPF6 | GeneProduct | ensembl:ENSCAFG00000013165 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:24148 |
NSEP1 | GeneProduct | ensembl:ENSCAFG00000002541 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:4904 |
SRSF9 | GeneProduct | ensembl:ENSCAFG00000010314 | PMID: 12738786, PMID: 12024014 (associated with hnRNP A1 splicing)Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8683 |
SUGP1 | GeneProduct | ensembl:ENSCAFG00000014314 | inferred from: SURP 2, G patch protein, UniProt:O60378Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:57794 |
SSFA1 | GeneProduct | ensembl:ENSCAFG00000018660 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:4809 |
SF3B3 | GeneProduct | ensembl:ENSCAFG00000020151 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:23450 |
PRPF40A | GeneProduct | ensembl:ENSCAFG00000005827 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:55660 |
PSKH1 | GeneProduct | ensembl:ENSCAFG00000020335 | PMID: 12466556Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:5681 |
SNRPB2 | GeneProduct | ensembl:ENSCAFG00000024887 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6629 |
HNRNPH2 | GeneProduct | ensembl:ENSCAFG00000017693 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3188 |
SNRNP40 | GeneProduct | ensembl:ENSCAFG00000011149 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:9410 |
HNRNPU | GeneProduct | ensembl:ENSCAFG00000015835 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3192 |
LSM7 | GeneProduct | ensembl:ENSCAFG00000019409 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:51690 |
DDX1 | GeneProduct | ensembl:ENSCAFG00000003686 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1653 |
SRPK1 | GeneProduct | ensembl:ENSCAFG00000001364 | PMID: 12773558Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6732 |
U2AF1 | GeneProduct | ensembl:ENSCAFG00000010572 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:7307 |
TRA2B | GeneProduct | ensembl:ENSCAFG00000013345 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6434 |
SRPK2 | GeneProduct | ensembl:ENSCAFG00000004057 | PMID: 12773558Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6733 |
SUPT5H | GeneProduct | ensembl:ENSCAFG00000005469 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6829 |
SRP54 | GeneProduct | ensembl:ENSCAFG00000013331 | PMID: 14729963Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6729 |
PRPF4B | GeneProduct | ensembl:ENSCAFG00000009381 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8899 |
CELF1 | GeneProduct | ensembl:ENSCAFG00000008452 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10658 |
SRSF1 | GeneProduct | ensembl:ENSCAFG00000017430 | Antagonist splicing factorHomology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6426 |
CLP1 | GeneProduct | ensembl:ENSCAFG00000007815 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10978 |
SNRPF | GeneProduct | ensembl:ENSCAFG00000031151 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6636 |
METTL3 | GeneProduct | ensembl:ENSCAFG00000005657 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:56339 |
SRSF6 | GeneProduct | ensembl:ENSCAFG00000009289 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6431 |
NXF1 | GeneProduct | ensembl:ENSCAFG00000015594 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10482 |
SF3B2 | GeneProduct | ensembl:ENSCAFG00000013033 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10992 |
SFPQ | GeneProduct | ensembl:ENSCAFG00000017608 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6421 |
RBM5 | GeneProduct | ensembl:ENSCAFG00000010866 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10181 |
PRPF3 | GeneProduct | ensembl:ENSCAFG00000011820 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:9129 |
CSTF3 | GeneProduct | ensembl:ENSCAFG00000007264 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1479 |
PAPOLA | GeneProduct | ensembl:ENSCAFG00000017783 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10914 |
HNRNPD | GeneProduct | ensembl:ENSCAFG00000025045 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3184 |
CPSF3 | GeneProduct | ensembl:ENSCAFG00000003375 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:51692 |
HNRNPAB | GeneProduct | ensembl:ENSCAFG00000000241 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3182 |
CLASRP | GeneProduct | ensembl:ENSCAFG00000004587 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:11129 |
DICER1 | GeneProduct | ensembl:ENSCAFG00000017701 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:23405 |
PABPN1 | GeneProduct | ensembl:ENSCAFG00000011482 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8106 |
PRMT1 | GeneProduct | ensembl:ENSCAFG00000003589 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3276 |
CPSF4 | GeneProduct | ensembl:ENSCAFG00000015036 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10898 |
SFSWAP | GeneProduct | ensembl:ENSCAFG00000006625 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6433 |
SRSF3 | GeneProduct | ensembl:ENSCAFG00000001414 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6428 |
SF3A1 | GeneProduct | ensembl:ENSCAFG00000012559 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10291 |
CD2BP2 | GeneProduct | ensembl:ENSCAFG00000016943 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10421 |
TMED10 | GeneProduct | ensembl:ENSCAFG00000017034 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10972 |
CPSF2 | GeneProduct | ensembl:ENSCAFG00000010909 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:53981 |
CPSF1 | GeneProduct | ensembl:ENSCAFG00000001600 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:29894 |
SRSF2 | GeneProduct | ensembl:ENSCAFG00000005147 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6427 |
PPM1G | GeneProduct | ensembl:ENSCAFG00000004923 | PMID: 12773558Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:5496 |
NUDT21 | GeneProduct | ensembl:ENSCAFG00000002667 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:11051 |
SF3B4 | GeneProduct | ensembl:ENSCAFG00000011617 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10262 |
CSTF2 | GeneProduct | ensembl:ENSCAFG00000017551 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1478 |
DHX38 | GeneProduct | ensembl:ENSCAFG00000020228 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:9785 |
HNRPC | GeneProduct | ensembl:ENSCAFG00000018380 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3183 |
SREK1 | GeneProduct | ensembl:ENSCAFG00000007560 | PMID: 14559993. SRrp86 is a unique member of the SR protein superfamily containing one RNA recognition motif and two serine-arginine (SR)-rich domains separated by an unusual glutamic acid-lysine (EK)-rich region. Previously, we showed that SRrp86 could regulate alternative splicing by both positively and negatively modulating the activity of other SR proteins and that the unique EK domain could inhibit both constitutive and alternative splicing. These functions were most consistent with the model in which SRrp86 functions by interacting with and thereby modulating the activity of target proteins. To identify the specific proteins that interact with SRrp86, we used a yeast two-hybrid library screen and immunoprecipitation coupled to mass spectrometry. We show that SRrp86 interacts with all of the core SR proteins, as well as a subset of other splicing regulatory proteins, including SAF-B, hnRNP G, YB-1, and p72. In contrast to previous results that showed activation of SRp20 by SRrp86, we now show that SAF-B, hnRNP G, and 9G8 all antagonize the activity of SRrp86. Overall, we conclude that not only does SRrp86 regulate SR protein activity but that it is, in turn, regulated by other splicing factors to control alternative splice site selection.Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:140890 |
SRSF4 | GeneProduct | ensembl:ENSCAFG00000011669 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6429 |
CLK2 | GeneProduct | ensembl:ENSCAFG00000016969 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1196 |
PRPF8 | GeneProduct | ensembl:ENSCAFG00000019221 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10594 |
SF3A3 | GeneProduct | ensembl:ENSCAFG00000003222 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10946 |
SNRPN | GeneProduct | ensembl:ENSCAFG00000030577 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6638 |
CLK4 | GeneProduct | ensembl:ENSCAFG00000000248 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:57396 |
SF3B1 | GeneProduct | ensembl:ENSCAFG00000010826 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:23451 |
PRMT2 | GeneProduct | ensembl:ENSCAFG00000012237 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3275 |
DDX20 | GeneProduct | ensembl:ENSCAFG00000013674 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:11218 |
NONO | GeneProduct | ensembl:ENSCAFG00000017071 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:4841 |
SRSF5 | GeneProduct | ensembl:ENSCAFG00000016589 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6430 |
PRPF18 | GeneProduct | ensembl:ENSCAFG00000004735 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8559 |
CSTF2T | GeneProduct | ensembl:ENSCAFG00000015567 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:23283 |
PTBP1 | GeneProduct | ensembl:ENSCAFG00000019693 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:5725 |
CSTF1 | GeneProduct | ensembl:ENSCAFG00000011914 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1477 |
HNRPL | GeneProduct | ensembl:ENSCAFG00000005652 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3191 |
U2AF2 | GeneProduct | ensembl:ENSCAFG00000002551 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:11338 |
SRSF7 | GeneProduct | ensembl:ENSCAFG00000029620 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6432 |
DHX9 | GeneProduct | ensembl:ENSCAFG00000013205 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1660 |
SUGP2 | GeneProduct | ensembl:ENSCAFG00000014431 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10147 |
SRRM1 | GeneProduct | ensembl:ENSCAFG00000012933 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10250 |
RNMT | GeneProduct | ensembl:ENSCAFG00000000172 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8731 |
SNRPE | GeneProduct | ensembl:ENSCAFG00000002085 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6635 |
CDC40 | GeneProduct | ensembl:ENSCAFG00000003868 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:51362 |
RBMX | GeneProduct | ensembl:ENSCAFG00000018962 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:27316 |
SNRPB | GeneProduct | ensembl:ENSCAFG00000031109 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6628 |
SMC1A | GeneProduct | ensembl:ENSCAFG00000016241 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:8243 |
SNRNP70 | GeneProduct | ensembl:ENSCAFG00000003711 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6625 |
TXNL4A | GeneProduct | ensembl:ENSCAFG00000000008 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10907 |
NCBP1 | GeneProduct | ensembl:ENSCAFG00000002445 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:4686 |
DHX8 | GeneProduct | ensembl:ENSCAFG00000014556 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1659 |
CLK1 | GeneProduct | ensembl:ENSCAFG00000011929 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1195 |
CLK3 | GeneProduct | ensembl:ENSCAFG00000017904 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1198 |
PTBP2 | GeneProduct | ensembl:ENSCAFG00000020080 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:58155 |
EFTUD2 | GeneProduct | ensembl:ENSCAFG00000014065 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:9343 |
RBM39 | GeneProduct | ensembl:ENSCAFG00000008327 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:9584 |
SNRPA | GeneProduct | ensembl:ENSCAFG00000005091 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:6626 |
HNRNPH1 | GeneProduct | ensembl:ENSCAFG00000000336 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:3187 |
FUS | GeneProduct | ensembl:ENSCAFG00000016862 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:2521 |
RNPS1 | GeneProduct | ensembl:ENSCAFG00000019397 | PMID: 14729963Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:10921 |
DHX15 | GeneProduct | ensembl:ENSCAFG00000016505 | Homology Mapping from Homo sapiens to Canis familiaris: Original ID = L:1665 |
References
- mRNA nuclear export at a glance. Carmody SR, Wente SR. J Cell Sci. 2009 Jun 15;122(Pt 12):1933–7. PubMed Europe PMC Scholia