TGF-beta signaling pathway (WP1045)
Bos taurus
The signal transduction mechanisms underlying the pathophysiological activities of transforming growth factor-β (TGF-β) have been extensively studied since its discovery nearly 30 years ago. TGF-β ligands belong to a large superfamily of cytokines that bears its name (TGF-β Superfamily) and includes bone morphogenic proteins, activins, inhibin, growth/differentiation factors, Mullerian inhibiting substance, Nodal, and several other structurally-related polypeptides. Mammals express three TGF-β isoforms (i.e., TGF-β1, TGF-β2, and TGF-β3) that are encoded by distinct genes in a tissue-specific and developmentally-regulated manner. TGF-β was identified originally via its stimulation of morphological transformation and anchorage-independent growth in fibroblasts; however, this cytokine is now recognized as being a potent tumor suppressor that prevents the dysregulated growth and survival of epithelial, endothelial, and hematopoietic cells. In addition, numerous studies have clearly established TGF-β as a multifunctional cytokine that plays essential roles in regulating virtually all aspects of mammalian development and differentiation, and in maintaining mammalian tissue homeostasis. The pleiotropic nature of TGF-β is highlighted by the fact that every cell in the metazoan body can produce and respond to this cytokine. Even more remarkably, malignant cells have evolved a variety of complex mechanisms capable of circumventing the tumor suppressing activities of TGF-β, and in doing so, typically convert the functions of TGF-β to that of a tumor promoter, particularly the induction of carcinoma epithelial-mesenchymal transition, invasion, and dissemination to distant organ sites. This peculiar conversion in TGF-β function is known as the "TGF-β Paradox", which underlies the lethality of TGF-β in metastatic cancer cells. Thus, elucidating the effectors and signaling modules activated by TGF-β may offer new insights into the development of novel neoadjuvants capable of effectively targeting the TGF-β pathway to significantly improve the clinical course of patients with cancer, fibrosis, or immunologic disorders. TGF-β is secreted from cells as a latent homodimeric polypeptide that becomes tethered to the extracellular matrix by latent-TGF-β-binding proteins. Mature TGF-β isoforms are activated and liberated from extracellular matrix depots by a variety of mechanisms, including proteolysis, reactive oxygen species, changes in pH, and physical interactions with integrins, thromobspondin-1, or SPARC. Once activated, mature TGF-β initiates transmembrane signaling by binding to two distinct transmembrane Ser/Thr protein kinases, termed TGF-β type I (TβR-I) and type II (TβR-II) receptors. In some cells and tissues, TGF-β also binds to a third cell surface receptor, TGF-β type III (TβR-III), which transfers TGF-β to TβR-II and TβR-I. Full activation of these cytokine:receptor ternary complexes transpires upon TβR-II-mediated transphosphorylation and activation of TβR-I, which then phosphorylates and activates the latent transcription factors, Smad2 and Smad3. Afterward, phosphorylated Smad2/3 interact physically with Smad4, with the resulting heterotrimers translocating into the nucleus to regulate the expression of TGF-β-responsive genes. These Smad-dependent events are subject to fine-tuning and crosstalk regulation in the cytoplasm by their interaction with a variety of adapter molecules, including SARA, Hgs, PML and Dab2, and with Smad7, whose inhibitory activity is modulated by STRAP, AMSH2, and Arkadia; and in the nucleus by their interaction with a variety of transcriptional activators and repressors that occur in a gene- and cell-specific manner. In addition to activating canonical Smad2/3-dependent signaling, accumulating evidence clearly links the development of a variety of human pathologies to aberrant coupling of TGF-β to its noncanonical effector molecules. Included in this ever expanding list of noncanonical signaling molecules stimulated by TGF-β are PI3K, AKT, mTOR, integrins and focal adhesion kinase, and members of the MAP kinase (e.g., ERK1/2, JNK, and p38 MAPK small GTP-binding proteins (e.g., Ras, Rho, and Rac1). The interactions and intersections between canonical and noncanonical TGF-β signaling systems are depicted in the pathway map. Please access this pathway at [http://www.netpath.org/netslim/tgf_beta_pathway.html NetSlim] database. If you use this pathway, please cite following paper: Kandasamy, K., Mohan, S. S., Raju, R., Keerthikumar, S., Kumar, G. S. S., Venugopal, A. K., Telikicherla, D., Navarro, J. D., Mathivanan, S., Pecquet, C., Gollapudi, S. K., Tattikota, S. G., Mohan, S., Padhukasahasram, H., Subbannayya, Y., Goel, R., Jacob, H. K. C., Zhong, J., Sekhar, R., Nanjappa, V., Balakrishnan, L., Subbaiah, R., Ramachandra, Y. L., Rahiman, B. A., Prasad, T. S. K., Lin, J., Houtman, J. C. D., Desiderio, S., Renauld, J., Constantinescu, S. N., Ohara, O., Hirano, T., Kubo, M., Singh, S., Khatri, P., Draghici, S., Bader, G. D., Sander, C., Leonard, W. J. and Pandey, A. (2010). NetPath: A public resource of curated signal transduction pathways. Genome Biology. 11:R3.
Authors
Martina Summer-Kutmon , Alex Pico , Egon Willighagen , and Eric WeitzActivity
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Organisms
Bos taurusCommunities
Annotations
Pathway Ontology
transforming growth factor-beta superfamily mediated signaling pathwayLabel | Type | Compact URI | Comment |
---|---|---|---|
UCHL5 | GeneProduct | ensembl:ENSBTAG00000013620 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:51377 |
SKI | Protein | ensembl:ENSBTAG00000038716 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6497 |
MAPK1 | Protein | ensembl:ENSBTAG00000010312 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5594 |
DAB2 | Protein | ensembl:ENSBTAG00000016152 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1601 |
SMAD7 | Protein | ensembl:ENSBTAG00000012441 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4092 |
SMAD3 | Protein | ensembl:ENSBTAG00000012599 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4088 |
MAPK8 | Protein | ensembl:ENSBTAG00000007876 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5599 |
SIK1 | Protein | ensembl:ENSBTAG00000011437 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:150094 |
RNF111 | Protein | ensembl:ENSBTAG00000014181 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:54778 |
SP1 | Protein | ensembl:ENSBTAG00000003021 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6667 |
ATF2 | Protein | ensembl:ENSBTAG00000002295 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1386 |
E2F5 | Protein | ensembl:ENSBTAG00000009378 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1875 |
FOXP3 | Protein | ensembl:ENSBTAG00000013279 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:50943 |
JUNB | Protein | ensembl:ENSBTAG00000012046 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3726 |
CDK1 | Protein | ensembl:ENSBTAG00000010109 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:983 |
WWP1 | Protein | ensembl:ENSBTAG00000015720 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:11059 |
TIEG1 | Protein | ensembl:ENSBTAG00000014396 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7071 |
NEDD9 | Protein | ensembl:ENSBTAG00000006287 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4739 |
TGFB1 | Protein | ensembl:ENSBTAG00000020457 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7040 |
NUP214 | Protein | ensembl:ENSBTAG00000021896 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8021 |
CDKN1A | Protein | ensembl:ENSBTAG00000008353 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1026 |
SMURF1 | Protein | ensembl:ENSBTAG00000007118 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:57154 |
CREBBP | Protein | ensembl:ENSBTAG00000026403 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1387 |
COPS5 | Protein | ensembl:ENSBTAG00000002784 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:10987 |
EP300 | Protein | ensembl:ENSBTAG00000016198 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2033 |
PML | Protein | ensembl:ENSBTAG00000015779 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5371 |
SPTBN1 | Protein | ensembl:ENSBTAG00000006995 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6711 |
TGFBR1 | Protein | ensembl:ENSBTAG00000018035 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7046 |
MAP3K7 | Protein | ensembl:ENSBTAG00000002625 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6885 |
LIMK2 | Protein | ensembl:ENSBTAG00000010662 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3985 |
PRKAR2A | Protein | ensembl:ENSBTAG00000014205 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5576 |
SMAD4 | Protein | ensembl:ENSBTAG00000006919 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4089 |
STRAP | Protein | ensembl:ENSBTAG00000014175 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:11171 |
CCND1 | Protein | ensembl:ENSBTAG00000017514 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:595 |
CDKN2B | Protein | ensembl:ENSBTAG00000016412 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1030 |
UBE2I | Protein | ensembl:ENSBTAG00000038866 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7329 |
MAPK9 | Protein | ensembl:ENSBTAG00000004709 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5601 |
ITCH | Protein | ensembl:ENSBTAG00000000308 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:83737 |
ZEB2 | Protein | ensembl:ENSBTAG00000012615 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9839 |
AKT1 | Protein | ensembl:ENSBTAG00000017636 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:207 |
MEF2A | Protein | ensembl:ENSBTAG00000010649 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4205 |
ZFYVE9 | Protein | ensembl:ENSBTAG00000014289 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9372 |
MAPK14 | Protein | ensembl:ENSBTAG00000020783 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1432 |
RBL2 | Protein | ensembl:ENSBTAG00000016243 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5934 |
MYC | Protein | ensembl:ENSBTAG00000008409 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4609 |
RHOA | Protein | ensembl:ENSBTAG00000004279 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:387 |
THBS1 | Protein | ensembl:ENSBTAG00000002006 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7057 |
MAPK4 | Protein | ensembl:ENSBTAG00000009907 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5596 |
AXIN1 | Protein | ensembl:ENSBTAG00000016577 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8312 |
SOS1 | Protein | ensembl:ENSBTAG00000011643 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6654 |
CDC42 | Protein | ensembl:ENSBTAG00000001700 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:998 |
TGFBR2 | Protein | ensembl:ENSBTAG00000019832 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7048 |
KLF6 | Protein | ensembl:ENSBTAG00000015188 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1316 |
ATF3 | Protein | ensembl:ENSBTAG00000008545 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:467 |
NEDD4L | Protein | ensembl:ENSBTAG00000005412 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:23327 |
SMAD2 | Protein | ensembl:ENSBTAG00000039916 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4087 |
STAMBPL1 | Protein | ensembl:ENSBTAG00000001298 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:57559 |
NUP153 | Protein | ensembl:ENSBTAG00000017128 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9972 |
C-MET | Protein | ensembl:ENSBTAG00000006161 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4233 |
BTRC | Protein | ensembl:ENSBTAG00000007476 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8945 |
TGIF1 | Protein | ensembl:ENSBTAG00000007718 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7050 |
MAP2K1 | Protein | ensembl:ENSBTAG00000033983 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5604 |
RAF1 | Protein | ensembl:ENSBTAG00000045748 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5894 |
SMURF2 | Protein | ensembl:ENSBTAG00000019853 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:64750 |
SNW1 | Protein | ensembl:ENSBTAG00000008136 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:22938 |
E2F4 | Protein | ensembl:ENSBTAG00000012063 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1874 |
SKP1 | Protein | ensembl:ENSBTAG00000025191 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6500 |
ETS1 | Protein | ensembl:ENSBTAG00000002341 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2113 |
RBX1 | Protein | ensembl:ENSBTAG00000030225 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9978 |
TP53 | Protein | ensembl:ENSBTAG00000001069 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7157 |
CAV1 | Protein | ensembl:ENSBTAG00000017869 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:857 |
TGFB1I1 | Protein | ensembl:ENSBTAG00000002391 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7041 |
SHC1 | Protein | ensembl:ENSBTAG00000019838 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6464 |
MAP2K2 | Protein | ensembl:ENSBTAG00000024450 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5605 |
FOXH1 | Protein | ensembl:ENSBTAG00000004761 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8928 |
ITGB1 | Protein | ensembl:ENSBTAG00000015910 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3688 |
SKIL | Protein | ensembl:ENSBTAG00000004154 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6498 |
FN1 | Protein | ensembl:ENSBTAG00000008300 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2335 |
MAP4K1 | Protein | ensembl:ENSBTAG00000021145 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:11184 |
CITED1 | Protein | ensembl:ENSBTAG00000045925 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4435 |
INTB3 | Protein | ensembl:ENSBTAG00000009987 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3690 |
RAC1 | Protein | ensembl:ENSBTAG00000009233 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5879 |
TFDP1 | Protein | ensembl:ENSBTAG00000019645 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7027 |
PIK3R1 | Protein | ensembl:ENSBTAG00000010989 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5295 |
CUL1 | Protein | ensembl:ENSBTAG00000008736 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8454 |
PAK2 | Protein | ensembl:ENSBTAG00000047856 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5062 |
APP | Protein | ensembl:ENSBTAG00000017753 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:351 |
CCNB2 | Protein | ensembl:ENSBTAG00000005269 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9133 |
MAP2K6 | Protein | ensembl:ENSBTAG00000001609 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5608 |
PPM1A | Protein | ensembl:ENSBTAG00000018127 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5494 |
HDAC1 | Protein | ensembl:ENSBTAG00000012698 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3065 |
TIEG2 | Protein | ensembl:ENSBTAG00000046218 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8462 |
TERT | Protein | ensembl:ENSBTAG00000012567 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7015 |
PIAS1 | Protein | ensembl:ENSBTAG00000005564 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8554 |
JUN | Protein | ensembl:ENSBTAG00000004037 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3725 |
SUMO1 | Protein | ensembl:ENSBTAG00000009859 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7341 |
MMP1 | Protein | ensembl:ENSBTAG00000048029 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4312 |
TRAP1 | Protein | ensembl:ENSBTAG00000020109 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:10131 |
ROCK1 | Protein | ensembl:ENSBTAG00000008403 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6093 |
BCAR1 | Protein | ensembl:ENSBTAG00000012002 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9564 |
SIN3A | Protein | ensembl:ENSBTAG00000009985 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:25942 |
TNC | Protein | ensembl:ENSBTAG00000000575 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3371 |
FOS | Protein | ensembl:ENSBTAG00000004322 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2353 |
MEF2C | Protein | ensembl:ENSBTAG00000020701 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4208 |
MAP2K4 | Protein | ensembl:ENSBTAG00000012103 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6416 |
MAP2K3 | Protein | ensembl:ENSBTAG00000010576 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5606 |
SRC | Protein | ensembl:ENSBTAG00000008938 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6714 |
COL1A2 | Protein | ensembl:ENSBTAG00000013472 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1278 |
ZFYVE16 | Protein | ensembl:ENSBTAG00000021577 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9765 |
ITGA2 | Protein | ensembl:ENSBTAG00000019289 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3673 |
GRB2 | Protein | ensembl:ENSBTAG00000004736 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2885 |
ZEB1 | Protein | ensembl:ENSBTAG00000020053 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6935 |
TRAF6 | Protein | ensembl:ENSBTAG00000036009 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7189 |
PIAS2 | Protein | ensembl:ENSBTAG00000007833 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9063 |
PDK1 | Protein | ensembl:ENSBTAG00000016836 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5163 |
TGFBR3 | Protein | ensembl:ENSBTAG00000024269 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7049 |
RBL1 | Protein | ensembl:ENSBTAG00000011541 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5933 |
PTK2 | Protein | ensembl:ENSBTAG00000009578 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5747 |
RUNX2 | Protein | ensembl:ENSBTAG00000004104 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:860 |
FOSB | Protein | ensembl:ENSBTAG00000008182 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2354 |
MAP3K7IP1 | Protein | ensembl:ENSBTAG00000019828 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:10454 |
YAP1 | Protein | ensembl:ENSBTAG00000039307 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:10413 |
HGS | Protein | ensembl:ENSBTAG00000000411 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9146 |
ITGB4 | Protein | ensembl:ENSBTAG00000018169 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3691 |
PARD6A | Protein | ensembl:ENSBTAG00000023734 | Mediates epithelial-mesenchymal transitionGO:0045217HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:50855 |
SNIP1 | Protein | ensembl:ENSBTAG00000016852 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:79753 |
References
- NetPath: a public resource of curated signal transduction pathways. Kandasamy K, Mohan SS, Raju R, Keerthikumar S, Kumar GSS, Venugopal AK, et al. Genome Biol. 2010 Jan 12;11(1):R3. PubMed Europe PMC Scholia