Semaphorin interactions (WP3151)
Bos taurus
Semaphorins are a large family of cell surface and secreted guidance molecules divided into eight classes on the basis of their structures. They all have an N-terminal conserved sema domain. Semaphorins signal through multimeric receptor complexes that include other proteins such as plexins and neuropilins. Original Pathway at Reactome: http://www.reactome.org/PathwayBrowser/#DB=gk_current&FOCUS_SPECIES_ID=48887&FOCUS_PATHWAY_ID=373755
Authors
Martina Summer-Kutmon , Linda Rieswijk , and Alex PicoActivity
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Organisms
Bos taurusCommunities
Annotations
Pathway Ontology
signaling pathwayLabel | Type | Compact URI | Comment |
---|---|---|---|
ATP | Metabolite | chebi:15422 | |
ADP | Metabolite | chebi:16761 | |
GTP [cytosol] | Metabolite | chebi:15996 | |
GDP [plasmamembrane] | Metabolite | chebi:17552 | |
GTP | Metabolite | chebi:15996 | |
GDP | Metabolite | chebi:17552 | |
GTP [plasmamembrane] | Metabolite | chebi:15996 | |
Pi | Metabolite | chebi:18367 | |
Mg2+ [plasmamembrane] | Metabolite | chebi:18420 | |
GDP [cytosol] | Metabolite | chebi:17552 | |
SEMA4D | Protein | ensembl:ENSBTAG00000001941 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q92854 |
ERBB2 | Protein | ensembl:ENSBTAG00000021798 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P04626 |
PLXNB1 | Protein | ensembl:ENSBTAG00000013407 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O43157 |
RND1 | Protein | ensembl:ENSBTAG00000018773 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q92730 |
ARHGEF11 | Protein | ensembl:ENSBTAG00000012361 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O15085 |
ARHGEF12 | Protein | ensembl:ENSBTAG00000021343 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9NZN5 |
RHOA | Protein | ensembl:ENSBTAG00000004279 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P61586 |
RHOB | Protein | ensembl:ENSBTAG00000046054 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P62745 |
RHOC | Protein | ensembl:ENSBTAG00000014299 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P08134 |
ROCK1 | Protein | ensembl:ENSBTAG00000008403 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q13464 |
ROCK2 | Protein | ensembl:ENSBTAG00000005847 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O75116 |
MYH10 | Protein | ensembl:ENSBTAG00000021151 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P35580 |
MYH14 | Protein | ensembl:ENSBTAG00000002580 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q7Z406 |
MYH9 | Protein | ensembl:ENSBTAG00000010402 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P35579 |
MYH11 | Protein | ensembl:ENSBTAG00000015988 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P35749 |
MYL6 | Protein | ensembl:ENSBTAG00000010799 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P60660 |
MYL9 | Protein | ensembl:ENSBTAG00000011473 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P24844 |
MYL12B | Protein | ensembl:ENSBTAG00000026266 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O14950 |
C-MET | Protein | ensembl:ENSBTAG00000006161 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P08581 |
RAC1 | Protein | ensembl:ENSBTAG00000009233 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P63000 |
RRAS | Protein | ensembl:ENSBTAG00000020983 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P10301 |
ARHGAP35 | Protein | ensembl:ENSBTAG00000015543 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9NRY4 |
PLXNA1 | Protein | ensembl:ENSBTAG00000009159 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9UIW2 |
PLXNA2 | Protein | ensembl:ENSBTAG00000001173 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O75051 |
PLXNA3 | Protein | ensembl:ENSBTAG00000008552 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P51805 |
PLEX2 | Protein | ensembl:ENSBTAG00000014543 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9HCM2 |
FYN | Protein | ensembl:ENSBTAG00000011851 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P06241 |
NRP1 | Protein | ensembl:ENSBTAG00000019866 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O14786 |
SEMA3A | Protein | ensembl:ENSBTAG00000018133 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q14563 |
FES | Protein | ensembl:ENSBTAG00000002941 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P07332 |
PIP5K1C | Protein | ensembl:ENSBTAG00000000710 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O60331 |
TLN1 | Protein | ensembl:ENSBTAG00000025868 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9Y490 |
PAK1 | Protein | ensembl:ENSBTAG00000010191 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q13153 |
PAK2 | Protein | ensembl:ENSBTAG00000047856 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q13177 |
LIMK1 | Protein | ensembl:ENSBTAG00000044083 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P53667 |
HSP90AA1 | Protein | ensembl:ENSBTAG00000006270 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P07900 |
HSP90AB1 | Protein | ensembl:ENSBTAG00000047699 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P08238 |
CFL1 | Protein | ensembl:ENSBTAG00000021455 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P23528 |
CDK5 | Protein | ensembl:ENSBTAG00000007766 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q00535 |
CDK5R1 | Protein | ensembl:ENSBTAG00000004475 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q15078 |
CRMP1 | Protein | ensembl:ENSBTAG00000004292 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q14194 |
DPYSL2 | Protein | ensembl:ENSBTAG00000018373 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q16555 |
DPYSL3 | Protein | ensembl:ENSBTAG00000010661 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q14195 |
DPYSL4 | Protein | ensembl:ENSBTAG00000017780 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O14531 |
DPYSL5 | Protein | ensembl:ENSBTAG00000018576 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9BPU6 |
DPYSL4 | Protein | ensembl:ENSBTAG00000017780 | CRMP-3 does not have the conserved serine 522 and based on similarity serine 544 may be phosphorylated upon sema3A stimulation.HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O14531 |
CD72 | Protein | ensembl:ENSBTAG00000011409 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P21854 |
PTPRC | Protein | ensembl:ENSBTAG00000023144 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P08575 |
PLXND1 | Protein | ensembl:ENSBTAG00000001814 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9Y4D7 |
SEMA3E | Protein | ensembl:ENSBTAG00000014920 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O15041 |
SEMA4A | Protein | ensembl:ENSBTAG00000012228 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9H3S1 |
PLXNB3 | Protein | ensembl:ENSBTAG00000010146 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9ULL4 |
SEMA5A | Protein | ensembl:ENSBTAG00000005021 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q13591 |
SEMA6A | Protein | ensembl:ENSBTAG00000020489 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9H2E6 |
TREM2 | Protein | ensembl:ENSBTAG00000007275 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q9NZC2 |
TYROBP | Protein | ensembl:ENSBTAG00000007338 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O43914 |
SEMA6D | Protein | ensembl:ENSBTAG00000016800 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:Q8NFY4 |
SEMA7A | Protein | ensembl:ENSBTAG00000011446 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O75326 |
PLXNC1 | Protein | ensembl:ENSBTAG00000011245 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:O60486 |
ITGB1 | Protein | ensembl:ENSBTAG00000015910 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P05556 |
ITGA1 | Protein | ensembl:ENSBTAG00000016525 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P56199 |
GSK3B | Protein | ensembl:ENSBTAG00000048057 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = S:P49841 |
References
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- The small GTP-binding protein Rho binds to and activates a 160 kDa Ser/Thr protein kinase homologous to myotonic dystrophy kinase. Ishizaki T, Maekawa M, Fujisawa K, Okawa K, Iwamatsu A, Fujita A, et al. EMBO J. 1996 Apr 15;15(8):1885–93. PubMed Europe PMC Scholia
- CD100 is associated with CD45 at the surface of human T lymphocytes. Role in T cell homotypic adhesion. Herold C, Elhabazi A, Bismuth G, Bensussan A, Boumsell L. J Immunol. 1996 Dec 15;157(12):5262–8. PubMed Europe PMC Scholia
- Multisite autophosphorylation of p21-activated protein kinase gamma-PAK as a function of activation. Gatti A, Huang Z, Tuazon PT, Traugh JA. J Biol Chem. 1999 Mar 19;274(12):8022–8. PubMed Europe PMC Scholia
- Plexins are a large family of receptors for transmembrane, secreted, and GPI-anchored semaphorins in vertebrates. Tamagnone L, Artigiani S, Chen H, He Z, Ming GI, Song H, et al. Cell. 1999 Oct 1;99(1):71–80. PubMed Europe PMC Scholia
- Activation of LIM-kinase by Pak1 couples Rac/Cdc42 GTPase signalling to actin cytoskeletal dynamics. Edwards DC, Sanders LC, Bokoch GM, Gill GN. Nat Cell Biol. 1999 Sep;1(5):253–9. PubMed Europe PMC Scholia
- Switch in the protein tyrosine phosphatase associated with human CD100 semaphorin at terminal B-cell differentiation stage. Billard C, Delaire S, Raffoux E, Bensussan A, Boumsell L. Blood. 2000 Feb 1;95(3):965–72. PubMed Europe PMC Scholia
- Rho-associated kinase ROCK activates LIM-kinase 1 by phosphorylation at threonine 508 within the activation loop. Ohashi K, Nagata K, Maekawa M, Ishizaki T, Narumiya S, Mizuno K. J Biol Chem. 2000 Feb 4;275(5):3577–82. PubMed Europe PMC Scholia
- Semaphorins and their receptors in vertebrates and invertebrates. Raper JA. Curr Opin Neurobiol. 2000 Feb;10(1):88–94. PubMed Europe PMC Scholia
- Molecular basis of semaphorin-mediated axon guidance. Nakamura F, Kalb RG, Strittmatter SM. J Neurobiol. 2000 Aug;44(2):219–29. PubMed Europe PMC Scholia
- Specific activation of LIM kinase 2 via phosphorylation of threonine 505 by ROCK, a Rho-dependent protein kinase. Sumi T, Matsumoto K, Nakamura T. J Biol Chem. 2001 Jan 5;276(1):670–6. PubMed Europe PMC Scholia
- The semaphorin receptor plexin-B1 specifically interacts with active Rac in a ligand-dependent manner. Vikis HG, Li W, He Z, Guan KL. Proc Natl Acad Sci U S A. 2000 Nov 7;97(23):12457–62. PubMed Europe PMC Scholia
- Identification of CD72 as a lymphocyte receptor for the class IV semaphorin CD100: a novel mechanism for regulating B cell signaling. Kumanogoh A, Watanabe C, Lee I, Wang X, Shi W, Araki H, et al. Immunity. 2000 Nov;13(5):621–31. PubMed Europe PMC Scholia
- Phosphorylation of cofilin by LIM-kinase is necessary for semaphorin 3A-induced growth cone collapse. Aizawa H, Wakatsuki S, Ishii A, Moriyama K, Sasaki Y, Ohashi K, et al. Nat Neurosci. 2001 Apr;4(4):367–73. PubMed Europe PMC Scholia
- The mechanism of PAK activation. Autophosphorylation events in both regulatory and kinase domains control activity. Chong C, Tan L, Lim L, Manser E. J Biol Chem. 2001 May 18;276(20):17347–53. PubMed Europe PMC Scholia
- Plexin signaling via off-track and rho family GTPases. Whitford KL, Ghosh A. Neuron. 2001 Oct 11;32(1):1–3. PubMed Europe PMC Scholia
- The plexin-B1/Rac interaction inhibits PAK activation and enhances Sema4D ligand binding. Vikis HG, Li W, Guan KL. Genes Dev. 2002 Apr 1;16(7):836–45. PubMed Europe PMC Scholia
- Involvement of Fes/Fps tyrosine kinase in semaphorin3A signaling. Mitsui N, Inatome R, Takahashi S, Goshima Y, Yamamura H, Yanagi S. EMBO J. 2002 Jul 1;21(13):3274–85. PubMed Europe PMC Scholia
- The semaphorin receptor plexin-B1 signals through a direct interaction with the Rho-specific nucleotide exchange factor, LARG. Aurandt J, Vikis HG, Gutkind JS, Ahn N, Guan KL. Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12085–90. PubMed Europe PMC Scholia
- The semaphorin 4D receptor controls invasive growth by coupling with Met. Giordano S, Corso S, Conrotto P, Artigiani S, Gilestro G, Barberis D, et al. Nat Cell Biol. 2002 Sep;4(9):720–4. PubMed Europe PMC Scholia
- Interaction of plexin-B1 with PDZ domain-containing Rho guanine nucleotide exchange factors. Hirotani M, Ohoka Y, Yamamoto T, Nirasawa H, Furuyama T, Kogo M, et al. Biochem Biophys Res Commun. 2002 Sep 13;297(1):32–7. PubMed Europe PMC Scholia
- Fyn and Cdk5 mediate semaphorin-3A signaling, which is involved in regulation of dendrite orientation in cerebral cortex. Sasaki Y, Cheng C, Uchida Y, Nakajima O, Ohshima T, Yagi T, et al. Neuron. 2002 Aug 29;35(5):907–20. PubMed Europe PMC Scholia
- Type I gamma phosphatidylinositol phosphate kinase targets and regulates focal adhesions. Ling K, Doughman RL, Firestone AJ, Bunce MW, Anderson RA. Nature. 2002 Nov 7;420(6911):89–93. PubMed Europe PMC Scholia
- Molecular mechanisms of axon guidance. Dickson BJ. Science. 2002 Dec 6;298(5600):1959–64. PubMed Europe PMC Scholia
- Semaphorin junction: making tracks toward neural connectivity. Pasterkamp RJ, Kolodkin AL. Curr Opin Neurobiol. 2003 Feb;13(1):79–89. PubMed Europe PMC Scholia
- Direct interaction of Rnd1 with Plexin-B1 regulates PDZ-RhoGEF-mediated Rho activation by Plexin-B1 and induces cell contraction in COS-7 cells. Oinuma I, Katoh H, Harada A, Negishi M. J Biol Chem. 2003 Jul 11;278(28):25671–7. PubMed Europe PMC Scholia
- Involvement of CD100, a lymphocyte semaphorin, in the activation of the human immune system via CD72: implications for the regulation of immune and inflammatory responses. Ishida I, Kumanogoh A, Suzuki K, Akahani S, Noda K, Kikutani H. Int Immunol. 2003 Aug;15(8):1027–34. PubMed Europe PMC Scholia
- Structural bases for CRMP function in plexin-dependent semaphorin3A signaling. Deo RC, Schmidt EF, Elhabazi A, Togashi H, Burley SK, Strittmatter SM. EMBO J. 2004 Jan 14;23(1):9–22. PubMed Europe PMC Scholia
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- Semaphorin 3E and plexin-D1 control vascular pattern independently of neuropilins. Gu C, Yoshida Y, Livet J, Reimert DV, Mann F, Merte J, et al. Science. 2005 Jan 14;307(5707):265–8. PubMed Europe PMC Scholia
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- Semaphorin3A signalling is mediated via sequential Cdk5 and GSK3beta phosphorylation of CRMP2: implication of common phosphorylating mechanism underlying axon guidance and Alzheimer’s disease. Uchida Y, Ohshima T, Sasaki Y, Suzuki H, Yanai S, Yamashita N, et al. Genes Cells. 2005 Feb;10(2):165–79. PubMed Europe PMC Scholia
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- FARP2 triggers signals for Sema3A-mediated axonal repulsion. Toyofuku T, Yoshida J, Sugimoto T, Zhang H, Kumanogoh A, Hori M, et al. Nat Neurosci. 2005 Dec;8(12):1712–9. PubMed Europe PMC Scholia
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- Intracellular kinases in semaphorin signaling. Ahmed A, Eickholt BJ. Adv Exp Med Biol. 2007;600:24–37. PubMed Europe PMC Scholia
- ErbB-2 and met reciprocally regulate cellular signaling via plexin-B1. Swiercz JM, Worzfeld T, Offermanns S. J Biol Chem. 2008 Jan 25;283(4):1893–901. PubMed Europe PMC Scholia
- Role of semaphorins during axon growth and guidance. Koncina E, Roth L, Gonthier B, Bagnard D. Adv Exp Med Biol. 2007;621:50–64. PubMed Europe PMC Scholia
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