Programmed cell death and cell engulfment (WP2829)

Caenorhabditis elegans

Programmed cell death (PCD), or apoptosis, is an integral component of C. elegans development. During development, 131 cells are fated to die by apoptosis. PCD is easily observed with Nomarski optics in the C. elegans embryo; the nucleus of the apoptotic cell becomes refractile, resembling a flat button, making C. elegans an easy model for following apoptotic cell death. PCD in C. elegans can be divided into three main phases (with participating genes): specification of which cells should live or die (ces-1, ces-2, in general); activation of the cell killing machinery (egl-1, ced-9, ced-4 and ced-3); and an execution phase where the dying cell is dismantled and removed through phagocytosis (ced-1,-2,-5,-6,-7,-10 and-12), which occurs in concert with apoptotic DNA degradation (cps-6, nuc-1). Molecular and biochemical studies in C. elegans revealed programmed cell death mechanisms conserved in humans. The regulatory pathway that controls cell death is composed of conserved cell death activators and inhibitors: EGL-1 and BH3-domain-only proteins, CED-9 and Bcl-2, CED-4 and Apaf-1, and CED-3 and caspases, in nematodes and mammals, respectively. Further the degradation of chromosomal DNA involves a mitochondrial proapoptotic endonuclease: endonuclease G (EndoG), and AIF in mammals and their orthologs CPS-6 and WAH-1 in worms.

Authors

Karen Yook , Martina Summer-Kutmon , Eric Weitz , Stefan Raats , and Egon Willighagen

Activity

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Organisms

Caenorhabditis elegans

Communities

Annotations

Pathway Ontology

phagocytosis pathway apoptotic cell death pathway

Cell Type Ontology

apoptosis fated cell

Participants

Label Type Compact URI Comment
CRN-1 GeneProduct ensembl:WBGene00000794
CYP-13 GeneProduct ensembl:WBGene00011677
CED-12 GeneProduct ensembl:WBGene00000426
CRN-4 GeneProduct ensembl:WBGene00000797
WAH-1 GeneProduct ensembl:WBGene00006937
CRN-5 GeneProduct ensembl:WBGene00000798
CPS-6 GeneProduct ensembl:WBGene00000787
EOR-2 GeneProduct ensembl:WBGene00001325
TRA-1 GeneProduct ensembl:WBGene00006604
CED-4 GeneProduct ensembl:WBGene00000418
CED-9 GeneProduct ensembl:WBGene00000423
CED-10/Rac1 GeneProduct wormbase:C09G12.8
CED-5/DOCK180 GeneProduct ensembl:WBGene00000419
EOR-1 GeneProduct ensembl:WBGene00001324
CES-1 GeneProduct ensembl:WBGene00000468
HLH-2 GeneProduct ensembl:WBGene00001949
CES-2 GeneProduct ensembl:WBGene00000469
HLH-3 GeneProduct ensembl:WBGene00001950
EGL-1 GeneProduct ensembl:WBGene00001170
CED-6 GeneProduct ensembl:WBGene00000420
CED-1/SREC? GeneProduct ensembl:WBGene00000415
CED-2/CrkII GeneProduct wormbase:Y41D4B.13
Active CED-3Protease GeneProduct ensembl:WBGene00000417
CED-3 GeneProduct ensembl:WBGene00000417
CED-7 GeneProduct ensembl:WBGene00000421
CED-7/ABC1 GeneProduct ensembl:WBGene00000421
PSR-1? GeneProduct ensembl:WBGene00004205
NUC-1 GeneProduct ensembl:WBGene00003828
CRN-6 GeneProduct ensembl:WBGene00000799
CRN-2 GeneProduct ensembl:WBGene00000795
CRN-3 GeneProduct ensembl:WBGene00000796

References

  1. How the worm removes corpses: the nematode C. elegans as a model system to study engulfment. Gumienny TL, Hengartner MO. Cell Death Differ. 2001 Jun;8(6):564–8. PubMed Europe PMC Scholia
  2. Programmed cell death. Conradt B, Xue D. WormBook. 2005 Oct 6;1–13. PubMed Europe PMC Scholia