Escherichia coli K-12 peripherome (WP2472)

Escherichia coli

This is a schematic longitudinal section of an E. coli cell. A section of the inner membrane is depicted; the rest of the cell envelope is omitted for simplicity. Based on MultiFun classification Peripheral Inner Membrane proteins (PIM proteins, green circles) participate in 9 cellular processes (indicated with bold letters): cell structure; DNA-, RNA- and protein related; metabolism; transport; response to stress and cell division. Sub-categories of these processes are indicated with bold grey letters. The proteins are grouped according to known complexes (encircled in gray color schemes) and pathways, together with their integral inner membrane partners (yellow circles) where known (Keseler, I.M. [2009]). Protein-protein interactions derived from tandem-affinity purification experiments (Aranda, B et al [2010]) are also mapped (where available) and depicted with connecting lines. For visualization purposes the protein-protein interactions were integrated and loaded in Cytoscape (Keseler, I.M. [2009]).

Authors

Economou Lab , Susan Coort , Egon Willighagen , and Eric Weitz

Activity

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Cited In

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Organisms

Escherichia coli

Communities

Annotations

Pathway Ontology

classic metabolic pathway regulatory pathway signaling pathway

Participants

Label Type Compact URI Comment
IhfB Protein uniprot:P0A6Y1
IhfA Protein uniprot:P0A6X7
HflC Protein uniprot:P0ABC3
HflK Protein uniprot:P0ABC7
YccA Protein uniprot:P0AAC6
FtsH Protein uniprot:P0AAI3
LptA Protein uniprot:P0ADV1
LptG Protein uniprot:P0ADC6
LptF Protein uniprot:P0AF98
LptC Protein uniprot:P0ADV9
MsbA Protein uniprot:P60752
KdtA Protein uniprot:P0AC75
LptB Protein uniprot:P0A9V1
RfaL Protein uniprot:P27243
RfaF Protein uniprot:P37692
RfaP Protein uniprot:P25741
RfaQ Protein uniprot:P25742
RfaC Protein uniprot:P24173
ArnC Protein uniprot:P77757
ArnT Protein uniprot:P76473
ArnD Protein uniprot:P76472
ArnA Protein uniprot:P77398
WecA Protein uniprot:P0AC78
WecG Protein uniprot:P27836
MsbB Protein uniprot:P24205
HtrB Protein uniprot:P0ACV0
GlpD Protein uniprot:P13035
WbbK Protein uniprot:P37751
PbpA Protein uniprot:P02918
UppP Protein uniprot:P60932
FtsN Protein uniprot:P29131
LpxB Protein uniprot:P10441
LpoA Protein uniprot:P45464
MukB Protein uniprot:P27836
Pbp2 Protein uniprot:P0AD65
YidC Protein uniprot:P25714
MurG Protein uniprot:P17443
Dld Protein uniprot:P06149
DadA Protein uniprot:P0A6J5
DbhA Protein uniprot:P0ACF0
PstB Protein uniprot:P0AAH0
PflB Protein uniprot:P09373
FtsZ Protein uniprot:P0AEZ3
FtsE Protein uniprot:P0A9R7
FtsA Protein uniprot:P0ABH0
Add Protein uniprot:P22333
YjgR Protein uniprot:P39342
YifE Protein uniprot:P0ADN2
MinE Protein uniprot:P0A734
MinC Protein uniprot:P18196
MinD Protein uniprot:P0AEZ3
PyrG Protein uniprot:P0A7E5
IspG Protein uniprot:P62620
RodZ Protein uniprot:P0A9X4
YbbP Protein uniprot:P77504
MreB Protein uniprot:P0A9X4
MreD Protein uniprot:P0ABH4
MreC Protein uniprot:P16926
PlsC Protein uniprot:P26647
Pss Protein uniprot:P23830
YbjX Protein uniprot:P75829
PhoL Protein uniprot:P0A9K3
YbgC Protein uniprot:P0A8Z3
AccA Protein uniprot:P0ABD5
Ppx Protein uniprot:P0AFL6
OpgH Protein uniprot:P62517
PlsB Protein uniprot:P0A7A7
Psd Protein uniprot:P0A8K1
Aas Protein uniprot:P31119
Kbl Protein uniprot:P0AB77
FabZ Protein uniprot:P0A6Q6
PlsX Protein uniprot:P27247
RlmH Protein uniprot:P0A8I8
RlmE Protein uniprot:P0C0R7
RL1 Protein uniprot:P0A7L0
RL36 Protein uniprot:P0A7Q6
RlmN Protein uniprot:P36979
RL25 Protein uniprot:P68919
RsmA Protein uniprot:P06992
RS12 Protein uniprot:P0A7S3
RL3 Protein uniprot:P60438
RL10 Protein uniprot:P0A7J3
RL14 Protein uniprot:P0ADY3
RS11 Protein uniprot:P0A7R9
Rl21 Protein uniprot:P0AG48
RS9 Protein uniprot:P0A7X3
AmpM Protein uniprot:P0AE18
EftS Protein uniprot:P0A6P1
RsmE Protein uniprot:P0AGL7
RsmG Protein uniprot:P0A6U5
Def Protein uniprot:P0A6K3
RlmA Protein uniprot:P36999
GreB Protein uniprot:P30128
RL11 Protein uniprot:P0A7J7
RS8 Protein uniprot:P0A7W7
RsmD Protein uniprot:P0ADX9
RsmI Protein uniprot:P67087
RlmF Protein uniprot:P75782
TIG Protein uniprot:P0A850
RS13 Protein uniprot:P0A7S9
RS5 Protein uniprot:P0A7W1
RL22 Protein uniprot:P61175
RS7 Protein uniprot:P02359
RL17 Protein uniprot:P0AG44
SelB Protein uniprot:P14081
DeaD Protein uniprot:P0A9P6
RsmC Protein uniprot:P39406
RL15 Protein uniprot:P02413
RsmH Protein uniprot:P60390
RS4 Protein uniprot:P0A7V8
RL28 Protein uniprot:P0A7M2
Rl19 Protein uniprot:P0A7K6
RS3 Protein uniprot:P0A7V3
RS16 Protein uniprot:P0A7T3
RlmM Protein uniprot:P0ADR6
If3 Protein uniprot:P0A707
RsgA Protein uniprot:P39286
Sra Protein uniprot:P68191
RS15 Protein uniprot:P0ADZ4
RL30 Protein uniprot:P0AG51
RL2 Protein uniprot:P60422
Efg Protein uniprot:P0A6M8
RL20 Protein uniprot:P0A7L3
RL29 Protein uniprot:P0A7M6
RL23 Protein uniprot:P0ADZ0
RL9 Protein uniprot:P0A7R1
RS10 Protein uniprot:P0A7R5
RL18 Protein uniprot:P0C018
RL5 Protein uniprot:P62399
RL4 Protein uniprot:P60723
RL35 Protein uniprot:P0A7Q1
RS2 Protein uniprot:P0A7V0
RL27 Protein uniprot:P0A7L8
RL31 Protein uniprot:P0A7M9
RsmB Protein uniprot:P36929
RL13 Protein uniprot:P0AA10
RS20 Protein uniprot:P0A7U7
RS21 Protein uniprot:P68679
RL7 Protein uniprot:P0A7K2
RL6 Protein uniprot:P0AG55
GreA Protein uniprot:P0A6W5
RS18 Protein uniprot:P0A7T7
If2 Protein uniprot:P0A705
If1 Protein uniprot:P69222
RS19 Protein uniprot:P0A7U3
RS1 Protein uniprot:P0AG67
RL32 Protein uniprot:P0A7N4
RL16 Protein uniprot:P0ADY7
RL34 Protein uniprot:P0A7P5
NusA Protein uniprot:P0AFF6
LepA Protein uniprot:P60785
RL24 Protein uniprot:P60624
RS6 Protein uniprot:P02358
RL33 Protein uniprot:P0A7N9
RS14 Protein uniprot:P0AG59
RlmL Protein uniprot:P75864
FtsY Protein uniprot:P10121
Srp54 Protein uniprot:P0AGD7
SecE Protein uniprot:P0AG96
SecG Protein uniprot:P0AG99
SecY Protein uniprot:P0AGA2
SecA Protein uniprot:P10408
SecB Protein uniprot:P0AG86
DamX Protein uniprot:P11557
FtsL Protein uniprot:P0AEN4
FtsI Protein uniprot:P0AD68
FtsQ Protein uniprot:P06136
FtsB Protein uniprot:P0A6S5
FtsW Protein uniprot:P0ABG4
FtsX Protein uniprot:P0AC30
EngB Protein uniprot:P0A6P7
PbpB Protein uniprot:P02919
LpoB Protein uniprot:P0AB38
PspB Protein uniprot:P0AFM9
PspC Protein uniprot:P0AFN2
PspA Protein uniprot:P0AFM6
PspD Protein uniprot:P0AFV8
RpoE Protein uniprot:P0AGB6
RseP Protein uniprot:P0AEH1
YhbJ Protein uniprot:P0A894
RhlB Protein uniprot:P0A8J8
Eno Protein uniprot:P0A6P9
HrpA Protein uniprot:P43329
YcgG Protein uniprot:P75995
SrmB Protein uniprot:P21507
Rnr Protein uniprot:P21499
Hfq Protein uniprot:P0A6X3
Rne Protein uniprot:P21513
Ppk Protein uniprot:P0A7B1
RhlE Protein uniprot:P25888
PncB Protein uniprot:P18133
NuoE Protein uniprot:P0AFD1
NuoG Protein uniprot:P33602
NuoB Protein uniprot:P0AFC7
NuoI Protein uniprot:P0AFD6
NuoCD Protein uniprot:P33599
NuoF Protein uniprot:P31979
NuoH Protein uniprot:P0AFD4
NuoA Protein uniprot:P0AFC3
NuoJ Protein uniprot:P0AFE0
NuoN Protein uniprot:P0AFF0
NuoK Protein uniprot:P0AFE4
NuoM Protein uniprot:P0AFE8
NuoL Protein uniprot:P33607
AtpA Protein uniprot:P0ABB0
AtpB Protein uniprot:P0ABB4
AtpE Protein uniprot:P0A6E6
Atp6 Protein uniprot:P68699
AtpD Protein uniprot:P0ABA4
AtpG Protein uniprot:P0ABA6
AtpL Protein uniprot:P68699
YadG Protein uniprot:P36879
YadH Protein uniprot:P0AFN6
UgpA Protein uniprot:P10905
UgpE Protein uniprot:P10906
LacI Protein uniprot:P03023
UgpB Protein uniprot:P0AG80
MetN Protein uniprot:P30750
MetI Protein uniprot:P31547
MetQ Protein uniprot:P28635
IlvD Protein uniprot:P05791
CysA Protein uniprot:P16676
CysW Protein uniprot:P0AEB0
CysT Protein uniprot:P16701
CysP Protein uniprot:P16700
ZnuC Protein uniprot:P39172
ZnuB Protein uniprot:P39832
ZnuA Protein uniprot:P39172
GlnQ Protein uniprot:P10346
GlnB Protein uniprot:P0A9Z1
GlnH Protein uniprot:P0AEQ3
HisP Protein uniprot:P07109
HisM Protein uniprot:P0AEU3
HisQ Protein uniprot:P52094
HisJ Protein uniprot:P0AEU0
ArtP Protein uniprot:P0AAF6
ArtQ Protein uniprot:P0AE34
ArtM Protein uniprot:P0AE30
ArtJ Protein uniprot:P30860
ArtI Protein uniprot:P30859
CydD Protein uniprot:P29018
CydC Protein uniprot:P23886
PstC Protein uniprot:P0AGH8
PstA Protein uniprot:P07654
PstS Protein uniprot:P0AG82
KefG Protein uniprot:P0A756
KefB Protein uniprot:P45522
SapB Protein uniprot:P0AGH3
SapF Protein uniprot:P0AAH8
SapD Protein uniprot:P0AAH4
SapA Protein uniprot:Q47622
PtgA Protein uniprot:P69783
PtgCB Protein uniprot:P69786
PthP Protein uniprot:P0AA04
Pt1 Protein uniprot:P08839
PttBC Protein uniprot:P36672
PtnAB Protein uniprot:P69797
PtnC Protein uniprot:P69801
PtnD Protein uniprot:P69805
FrdA Protein uniprot:P00363
FrdB Protein uniprot:P0AC47
FrdD Protein uniprot:P0A8Q3
FrdC Protein uniprot:P0A8Q0
DhsB Protein uniprot:P07014
DhsA Protein uniprot:P0AC41
DhsC Protein uniprot:P69054
LldD Protein uniprot:P33232
NdK Protein uniprot:P0A763
SthA Protein uniprot:P27306
CyoD Protein uniprot:P0ABJ6
CyoC Protein uniprot:P0ABJ3
CyoB Protein uniprot:P0ABI8
CyoA Protein uniprot:P0ABJ1
PyrD Protein uniprot:P0A7E1
PgK Protein uniprot:P0A799
YajC Protein uniprot:P0ADZ7
SecD Protein uniprot:P0AG90
SecF Protein uniprot:P0AG93
TatC Protein uniprot:P69423
TatB Protein uniprot:P69425
TatE Protein uniprot:P0A843
TatA Protein uniprot:P69428
LolE Protein uniprot:P75958
LolC Protein uniprot:P0ADC3
LolA Protein uniprot:P61316
LolB Protein uniprot:P61320
LolD Protein uniprot:P75957
GrpE Protein uniprot:P09372
DnaJ Protein uniprot:P08622
DnaK Protein uniprot:P0A6Y8
LonH Protein uniprot:P75867
OpdA Protein uniprot:P27298
AmpA Protein uniprot:P68767
Ch10 Protein uniprot:P0A6F9
Ch60 Protein uniprot:P0A6F5
HslU Protein uniprot:P0A6H5
PpiB Protein uniprot:P23869
HtpG Protein uniprot:P0A6Z3
AccD Protein uniprot:P0A9Q5
BccB Protein uniprot:P0ABD8
AccC Protein uniprot:P24182
Smp Protein uniprot:P0AGC7
GlgA Protein uniprot:P0A6U8
GatY Protein uniprot:P0C8J6
GatZ Protein uniprot:P0C8J8
Odp2 Protein uniprot:P06959
DldH Protein uniprot:P0A9P0
Odp1 Protein uniprot:P0AFG8
Odo2 Protein uniprot:P0AFG6
Odo1 Protein uniprot:P0AFG3
AceE Protein uniprot:P0AFG8
AcoN2 Protein uniprot:P36683
AcoN1 Protein uniprot:P25516
CisY Protein uniprot:P0ABH7
GcdP Protein uniprot:P33195
GcsH Protein uniprot:P0A6T9
GcsT Protein uniprot:P27248
SucC Protein uniprot:P0A836
SucD Protein uniprot:P0AGE9
NifU Protein uniprot:P0A6B7
IscS Protein uniprot:P0A6B7
MetH Protein uniprot:P13009
DppF Protein uniprot:P37313
YdiJ Protein uniprot:P31447
CarA Protein uniprot:P0A6F1
CarB Protein uniprot:P00968
HemY Protein uniprot:P0ACB7
HemG Protein uniprot:P0ACB4
HemH Protein uniprot:P23871
YbbO Protein uniprot:P0AFP4
TreC Protein uniprot:P28904
PdxH Protein uniprot:P0AFI7
NusG Protein uniprot:P0AFG0
RpoB Protein uniprot:P0A8V2
Rho Protein uniprot:P0AG30
RpoA Protein uniprot:P0A7Z4
RpoD Protein uniprot:P00579
RpoC Protein uniprot:P0A8T7
RpoZ Protein uniprot:P0A800
RpoS Protein uniprot:P13445
FadJ Protein uniprot:P77399
FadI Protein uniprot:P0AEN1
FadB Protein uniprot:P21177
FadA Protein uniprot:P21151
FabF Protein uniprot:P0AAI5
FabG Protein uniprot:P0AEK2
FabB Protein uniprot:P0A953
FabR Protein uniprot:P0ACU5 Fatty acid biosynthesis Regulator
FabI Protein uniprot:P0AEK4
MlaE Protein uniprot:P64606
MlaD Protein uniprot:P64604
MlaC Protein uniprot:P0ADV7
MlaB Protein uniprot:P64602
MlaF Protein uniprot:P63386
DnaA Protein uniprot:P03004
SeqA Protein uniprot:P0AFY8
MukB Protein uniprot:P22523
MukF Protein uniprot:P60293
MukE Protein uniprot:P22524
ParC Protein uniprot:P0AFI2
ParE Protein uniprot:P20083
Dpo1 Protein uniprot:P00582
Fis Protein uniprot:P0A6R3
DnaB Protein uniprot:P0ACB0
GyrA Protein uniprot:P0AES4
GyrB Protein uniprot:P0AES6
Crp Protein uniprot:P0ACJ8
PutA Protein uniprot:P09546
YfiF Protein uniprot:P0AGJ5
HflD Protein uniprot:P25746
GlgB Protein uniprot:P07762
GlgC Protein uniprot:P0A6V1

References

  1. The Escherichia coli peripheral inner membrane proteome. Papanastasiou M, Orfanoudaki G, Koukaki M, Kountourakis N, Sardis MF, Aivaliotis M, et al. Mol Cell Proteomics. 2013 Mar;12(3):599–610. PubMed Europe PMC Scholia