Heme biosynthesis (WP1314)

Danio rerio

The enzymatic process that produces heme is properly called porphyrin synthesis, as all the intermediates are tetrapyrroles that are chemically classified are porphyrins. The process is highly conserved across biology. In humans, this pathway serves almost exclusively to form heme. In other species, it also produces similar substances such as cobalamin (vitamin B12). The pathway is initiated by the synthesis of D-Aminolevulinic acid (dALA or δALA) from the amino acid glycine and succinyl-CoA from the citric acid cycle (Krebs cycle). The rate-limiting enzyme responsible for this reaction, ALA synthase, is strictly regulated by intracellular iron levels and heme concentration. A low-iron level, e.g., in iron deficiency, leads to decreased porphyrin synthesis, which prevents accumulation of the toxic intermediates. This mechanism is of therapeutic importance: infusion of heme arginate or hematin can abort attacks of porphyria in patients with an inborn error of metabolism of this process, by reducing transcription of ALA synthase. The organs mainly involved in heme synthesis are the liver and the bone marrow, although every cell requires heme to function properly. Heme is seen as an intermediate molecule in catabolism of haemoglobin in the process of bilirubin metabolism. Source: Wikipedia.

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Authors

Caroline Miller , Egon Willighagen , Jonathan Mélius , Martina Summer-Kutmon , and Eric Weitz

Activity

last edited

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Organisms

Danio rerio

Communities

Annotations

Pathway Ontology

heme biosynthetic pathway

Participants

Label Type Compact URI Comment
O₂ Metabolite hmdb:HMDB0001377
NH3 Metabolite hmdb:HMDB0000051
H₂O₂ Metabolite hmdb:HMDB0003125
CoA Metabolite hmdb:HMDB0001423
CO₂ Metabolite hmdb:HMDB0001967
H₂O Metabolite hmdb:HMDB0002111
Porphobilinogen Metabolite hmdb:HMDB0000245
alas2 GeneProduct ncbigene:64607
fech GeneProduct ncbigene:58215
ppox GeneProduct ncbigene:664750
cpox GeneProduct ncbigene:321294
alas1 GeneProduct ncbigene:64608
zgc:110219 GeneProduct ncbigene:550338
uros GeneProduct ncbigene:404731
urod GeneProduct ncbigene:30617

References