wikipathways-collection

WikiPathways WP5509

• WikiPathways: WP5509 (classic)
• Species: Homo sapiens
• Scholia: WP5509

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests
  • secondaryChEBIIdentifiers: .x we found 1 problem(s):
    • Secondary ChEBI identifiers detected: 1
  • faultyChEBIIdentifiers: .. all OK!
  • chebiDataTypo: . all OK!
  • faultyChEBIChEBIIdentifiers: . all OK!
  • neutralIons: .. all OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 7
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 3

Fails

ChEBIMetabolitesTests.secondaryChEBIIdentifiers

Secondary ChEBI identifiers detected: 1

http://classic.wikipathways.org/instance/WP5509_r136282 Glucagon has 539 but has primary identifier CHEBI:18094

Data nodes without an identifier

The following DataNodes have no identifier: 1

• http://classic.wikipathways.org/instance/WP5509_r136282 http://rdf.wikipathways.org/Pathway/WP5509_r136282/DataNode/b8a8d (Fat accumulation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 7

• http://classic.wikipathways.org/instance/WP5509_r136282 http://rdf.wikipathways.org/Pathway/WP5509_r136282/DataNode/d86e3 (Bone formation)
• http://classic.wikipathways.org/instance/WP5509_r136282 http://rdf.wikipathways.org/Pathway/WP5509_r136282/DataNode/e1054 (Cardiac output)
• http://classic.wikipathways.org/instance/WP5509_r136282 http://rdf.wikipathways.org/Pathway/WP5509_r136282/DataNode/ccc21 (Cardioprotection)
• http://classic.wikipathways.org/instance/WP5509_r136282 http://rdf.wikipathways.org/Pathway/WP5509_r136282/DataNode/b8a8d (Fat accumulation)
• http://classic.wikipathways.org/instance/WP5509_r136282 http://rdf.wikipathways.org/Pathway/WP5509_r136282/DataNode/f1e98 (Gastric emptying)
• http://classic.wikipathways.org/instance/WP5509_r136282 http://rdf.wikipathways.org/Pathway/WP5509_r136282/DataNode/f1f2b (Memory)
• http://classic.wikipathways.org/instance/WP5509_r136282 http://rdf.wikipathways.org/Pathway/WP5509_r136282/DataNode/d2cfe (Proliferation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes