wikipathways-collection

WikiPathways WP5503

• WikiPathways: WP5503 (classic)
• Species: Homo sapiens
• Scholia: WP5503

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 3
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 4

• http://classic.wikipathways.org/instance/WP5503_r136076 http://rdf.wikipathways.org/Pathway/WP5503_r136076/DataNode/c2552 (Calcium dependent pathway)
• http://classic.wikipathways.org/instance/WP5503_r136076 http://rdf.wikipathways.org/Pathway/WP5503_r136076/DataNode/bd754 (Calcium sensitization pathway)
• http://classic.wikipathways.org/instance/WP5503_r136076 http://rdf.wikipathways.org/Pathway/WP5503_r136076/DataNode/f1c36 (Contractile agonist)
• http://classic.wikipathways.org/instance/WP5503_r136076 http://rdf.wikipathways.org/Pathway/WP5503_r136076/DataNode/b7d88 (Contractile receptor)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 3

• http://classic.wikipathways.org/instance/WP5503_r136076 http://rdf.wikipathways.org/Pathway/WP5503_r136076/DataNode/e3880 (Bronchoconstriction)
• http://classic.wikipathways.org/instance/WP5503_r136076 http://rdf.wikipathways.org/Pathway/WP5503_r136076/DataNode/f0b84 (GRE)
• http://classic.wikipathways.org/instance/WP5503_r136076 http://rdf.wikipathways.org/Pathway/WP5503_r136076/DataNode/f13bd (GRE)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP5503_r136076 http://rdf.wikipathways.org/Pathway/WP5503_r136076/WP/Interaction/d1f80 "CREB1" (https://identifiers.org/ensembl/ENSG00000118260) and 
CREB1" (https://identifiers.org/ensembl/ENSG00000118260)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations