wikipathways-collection

WikiPathways WP5483

• WikiPathways: WP5483 (classic)
• Species: Homo sapiens
• Scholia: WP5483

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 11
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 11
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests
  • curationAndHypothetical: .. all OK!
  • curationAndNeedsWork: .. all OK!
  • curationAndReactome: .. all OK!
  • dataNodeWithoutGraphId: .. all OK!
  • duplicateTitles: .. all OK!
  • emptyDataSources: . all OK!
  • emptyLabelOfNodeWithIdentifier: .. all OK!
  • groupsHaveDetail: .. all OK!
  • noTags: .. all OK!
  • nullDataSources: .. all OK!
  • stockComments: .x we found 1 problem(s):
    • Number of graphical items with the comment “Type your comment here”: 5
  • titlesShortEnough: .. all OK!
  • undefinedDataSources: .. all OK!
  • undefinedIdentifier: .. all OK!
  • weirdCharacterTitles: .. all OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 11

• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/b3911 (Adenosine )
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/f7d92 (Adenosine )
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/ad61c (CpGs in DNA)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/d8711 (CpGs in DNA)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/cee77 (H2/3/4)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/e7cb6 (H2/3/4)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/f24f1 (H2/3/4)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/b2df5 (m6A)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/ed487 (m6A)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/d6515 (mRNA )
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/c0b34 (pre-mRNA )

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 11

• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/b3911 (Adenosine )
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/f7d92 (Adenosine )
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/ad61c (CpGs in DNA)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/d8711 (CpGs in DNA)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/cee77 (H2/3/4)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/e7cb6 (H2/3/4)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/f24f1 (H2/3/4)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/b2df5 (m6A)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/ed487 (m6A)
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/d6515 (mRNA )
• http://classic.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/c0b34 (pre-mRNA )

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

The pathway contains stock comments

Number of graphical items with the comment “Type your comment here”: 5

• http://www.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/c0b34
• http://www.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/e429b
• http://www.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/DataNode/ef531
• http://www.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/Interaction/id79d697b4
• http://www.wikipathways.org/instance/WP5483_r135542 http://rdf.wikipathways.org/Pathway/WP5483_r135542/Interaction/idd5acbdc1

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneralTests/stockComments