wikipathways-collection

WikiPathways WP5432

• WikiPathways: WP5432 (classic)
• Species: Homo sapiens
• Scholia: WP5432

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 79
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 20
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 79

• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d934f (10-G4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d2fc6 (11-F3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/cdb4b (11-G3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c887b (11-G4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c32cc (11-H3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/bddbf (12-F3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c8896 (12-G3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c13ed (12-H3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c4f61 (13,14-epoxy-DPA*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/da1d3 (13-G4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c1a17 (13-H4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a3c46 (13R-HpDPA*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/cb817 (14-G4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/ae08c (15-G3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/fdc0e (15-H3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f38ad (15S-hydroxy-5S-HpEPE*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f4042 (15d-PGD3*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a44e8 (17-G4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/efe12 (17-H4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/fec85 (18-F3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/e35d6 (18-G3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f5a4a (18-H3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/ae0a3 (18S-HpEPE*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/ed405 (20-G4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/ef8bc (20-H4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d0e5d (20-carboxy-RvE1*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f8feb (4-G4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/e71f3 (4-H4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d94d9 (4S-HpDHA)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/fe805 (5,6-epoxy-15(S)-HEPE*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f4020 (5-F3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f8199 (5-G3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f984a (5-H3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/dc271 (5S,12R,18R-TriHEPE*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/eb267 (5S,6R,18R-TriHEPE*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a9c4c (5S,6S,18R-TriHEPE*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d41ca (6-keto-PGF2α*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/ebb0d (7,8-epoxy-13R-HDPA*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d860c (7-G4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/e8c63 (7-H4-NeuroP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/b56d9 (7-hydroperoxy-13R-HpDPA*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/e470c (7S,8R-epoxy-17S-HDPA*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/bd15e (8-F3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/cee4c (8-G3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a7509 (8-H3-IsoP*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c8faa (Dehydration)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/ce157 (Dehydration*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c5221 (Enzymatic Epoxidation)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/b2c43 (Enzymatic dehydrogenation)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a0b0a (Hydrolase*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/bda93 (Hydrolase*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d9c82 (Hydrolase*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/dbac2 (Hydrolase*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f17a8 (Hydrolase*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/cece1 (Hydrolysis*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/b0e1f (Irradiation-induced Senescence )
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d62d6 (Irradiation-induced senescence)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/cf57c (LGR6 receptor)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/bfee1 (LTA5*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a64e1 (Mar2(n-3 DPA)*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a0818 (Mitochondrial dysfunction-associated senescence Oncogene-induced senescence(RAS))
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/be53c (Mitochondrial dysfunction-associated senescence Oncogene-induced senescence(RAS) Irradiation-induced senescence)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d5691 (Non-enzymatic hydrolysis)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/eb54c (PD2*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c19ea (PGI3)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a3ae1 (Prostaglandin F synthase)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f6005 (RORalpha)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d9873 (Reduction*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/effce (Reduction*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c0878 (RvD1(n-3 DPA)*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a21f0 (RvD2(n-3 DPA)*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/cf61f (RvD5(n-3 DPA)*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/b1456 (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/ec63c (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f0579 (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f262a (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f286e (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/fe985 (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a0f43 (Δ9-Elongase*)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 20

• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c8faa (Dehydration)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/ce157 (Dehydration*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/c5221 (Enzymatic Epoxidation)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d9c82 (Hydrolase*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/dbac2 (Hydrolase*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/b0e1f (Irradiation-induced Senescence )
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d62d6 (Irradiation-induced senescence)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a0818 (Mitochondrial dysfunction-associated senescence Oncogene-induced senescence(RAS))
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/be53c (Mitochondrial dysfunction-associated senescence Oncogene-induced senescence(RAS) Irradiation-induced senescence)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d5691 (Non-enzymatic hydrolysis)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a3ae1 (Prostaglandin F synthase)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/d9873 (Reduction*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/effce (Reduction*)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/b1456 (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/ec63c (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f0579 (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f262a (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/f286e (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/fe985 (Unknown)
• http://classic.wikipathways.org/instance/WP5432_r135755 http://rdf.wikipathways.org/Pathway/WP5432_r135755/DataNode/a0f43 (Δ9-Elongase*)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP5432_r135755 Cytochrome P450 with datasource InterPro

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping