wikipathways-collection

WikiPathways WP5333

• WikiPathways: WP5333 (classic)
• Species: Homo sapiens
• Scholia: WP5333

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 11
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 10
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 11

http://classic.wikipathways.org/instance/WP5333_r129528 "Nascent HDL" with graphId a46ea
http://classic.wikipathways.org/instance/WP5333_r129528 "Lipid droplet" with graphId ad1ba
http://classic.wikipathways.org/instance/WP5333_r129528 "Dihydro-ff-MAS" with graphId a41ec
http://classic.wikipathways.org/instance/WP5333_r129528 "Dihydro-t-MAS" with graphId a4606
http://classic.wikipathways.org/instance/WP5333_r129528 "Pre-Chylomicron" with graphId ade58
http://classic.wikipathways.org/instance/WP5333_r129528 "t-MAS" with graphId d7b7f
http://classic.wikipathways.org/instance/WP5333_r129528 "ff-MAS" with graphId fa3f2
http://classic.wikipathways.org/instance/WP5333_r129528 "Dehydrodesmosterol" with graphId a4238
http://classic.wikipathways.org/instance/WP5333_r129528 "Dehydrolathosterol" with graphId c596e
http://classic.wikipathways.org/instance/WP5333_r129528 "Pre-Chylomicron" with graphId c8ba7
http://classic.wikipathways.org/instance/WP5333_r129528 "Chylomicron" with graphId fa4c9

Possible MIM translocation

Interactions between identical nodes: 10

http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/idce0527a6 "fatty acids" (https://identifiers.org/chebi/CHEBI:35366) and 
fatty acids" (https://identifiers.org/chebi/CHEBI:35366)
http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/id881db5bd "fatty acids" (https://identifiers.org/chebi/CHEBI:35366) and 
fatty acids" (https://identifiers.org/chebi/CHEBI:35366)
http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/id8fdc1aa4 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/id7c9d26e1 "fatty acids" (https://identifiers.org/chebi/CHEBI:35366) and 
fatty acids" (https://identifiers.org/chebi/CHEBI:35366)
http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/b8753 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/idf2dcfcf5 "Cholesterol" (https://identifiers.org/cas/57-88-5) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/id2799a7a2 "lysophospholipids" (https://identifiers.org/chebi/CHEBI:16961) and 
lysophospholipids" (https://identifiers.org/chebi/CHEBI:16961)
http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/e08da "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/b42a7 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5333_r129528 http://rdf.wikipathways.org/Pathway/WP5333_r129528/WP/Interaction/b07e5 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations