wikipathways-collection

WikiPathways WP5189

• WikiPathways: WP5189 (classic)
• Species: Homo sapiens
• Scholia: WP5189

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 2
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 5
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 4

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP5189_r128212 http://rdf.wikipathways.org/Pathway/WP5189_r128212/DataNode/cb8d9 (Reductase)
• http://classic.wikipathways.org/instance/WP5189_r128212 http://rdf.wikipathways.org/Pathway/WP5189_r128212/DataNode/fbedb (Reductase)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 2

• http://classic.wikipathways.org/instance/WP5189_r128212 http://rdf.wikipathways.org/Pathway/WP5189_r128212/DataNode/cb8d9 (Reductase)
• http://classic.wikipathways.org/instance/WP5189_r128212 http://rdf.wikipathways.org/Pathway/WP5189_r128212/DataNode/fbedb (Reductase)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 5

http://classic.wikipathways.org/instance/WP5189_r128212 "X-linked distal spinal 
muscular atrophy" with graphId a0156
http://classic.wikipathways.org/instance/WP5189_r128212 "MEDNIK syndrome" with graphId f1b13
http://classic.wikipathways.org/instance/WP5189_r128212 "Occipital horn syndrome" with graphId f0f37
http://classic.wikipathways.org/instance/WP5189_r128212 "Wilson disease" with graphId c84f9
http://classic.wikipathways.org/instance/WP5189_r128212 "Menkes disease" with graphId dfcfd

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP5189_r128212 ‘Copper metabolism’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference