wikipathways-collection

WikiPathways WP5093

• WikiPathways: WP5093 (classic)
• Species: Homo sapiens
• Scholia: WP5093

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 33
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP5093_r126328 http://rdf.wikipathways.org/Pathway/WP5093_r126328/DataNode/ccf4a (Adenylyl cyclase)
• http://classic.wikipathways.org/instance/WP5093_r126328 http://rdf.wikipathways.org/Pathway/WP5093_r126328/DataNode/b5a20 (Calcium influx)
• http://classic.wikipathways.org/instance/WP5093_r126328 http://rdf.wikipathways.org/Pathway/WP5093_r126328/DataNode/b591f (OPRM1)
• http://classic.wikipathways.org/instance/WP5093_r126328 http://rdf.wikipathways.org/Pathway/WP5093_r126328/DataNode/cf9d0 (OPRM1)
• http://classic.wikipathways.org/instance/WP5093_r126328 http://rdf.wikipathways.org/Pathway/WP5093_r126328/DataNode/d4e67 (OPRM1)
• http://classic.wikipathways.org/instance/WP5093_r126328 http://rdf.wikipathways.org/Pathway/WP5093_r126328/DataNode/dba38 (OPRM1)
• http://classic.wikipathways.org/instance/WP5093_r126328 http://rdf.wikipathways.org/Pathway/WP5093_r126328/DataNode/a9670 (Phosphatidic acid synthesis)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 33

http://classic.wikipathways.org/instance/WP5093_r126328 RPS6KB1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 KDR with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 CCR5 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 GRIN1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 STAT3 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 PLD2 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 EGFR with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 EEA1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 PRKCG with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 NFE2L2 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 MAPK9 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 EIF4EBP1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 EIF4EBP2 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 JUN with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 IL1B with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 CASP1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 PDGFRB with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 PRKCZ with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 PDK1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 OPRM1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 AKT with datasource RefSeq
http://classic.wikipathways.org/instance/WP5093_r126328 GSK3B with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 CAMK2A with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 MAPK8 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 CDK5 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 NOS1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 STAT5B with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 PLCB3 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 GRIN2A with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 CREB1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 AKT1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 RGS17 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5093_r126328 IGF1R with datasource NCBI Protein

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping