wikipathways-collection

WikiPathways WP4925

• WikiPathways: WP4925 (classic)
• Species: Homo sapiens
• Scholia: WP4925

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 7
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 6
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 7

http://classic.wikipathways.org/instance/WP4925_r134614 "Regulated 
IRE1-dependent 
decay" with graphId dc34f
http://classic.wikipathways.org/instance/WP4925_r134614 "mRNAs
miRNAs" with graphId d2626
http://classic.wikipathways.org/instance/WP4925_r134614 "NLRP3
inflammasome" with graphId cf514
http://classic.wikipathways.org/instance/WP4925_r134614 "Sterile
inflammation" with graphId c24a1
http://classic.wikipathways.org/instance/WP4925_r134614 "ATF6 activated chaperone genes" with graphId f0493
http://classic.wikipathways.org/instance/WP4925_r134614 "XBP1(s) activated chaperone genes" with graphId ecd14
http://classic.wikipathways.org/instance/WP4925_r134614 "miRNAs" with graphId a1249

Possible MIM translocation

Interactions between identical nodes: 6

http://classic.wikipathways.org/instance/WP4925_r134614 http://rdf.wikipathways.org/Pathway/WP4925_r134614/WP/Interaction/id1be6b1b "ATF4" (https://identifiers.org/ensembl/ENSG00000128272) and 
ATF4" (https://identifiers.org/ensembl/ENSG00000128272)
http://classic.wikipathways.org/instance/WP4925_r134614 http://rdf.wikipathways.org/Pathway/WP4925_r134614/WP/Interaction/ida551bc98 "TNFRSF10B" (https://identifiers.org/ensembl/ENSG00000120889) and 
TNFRSF10B" (https://identifiers.org/ensembl/ENSG00000120889)
http://classic.wikipathways.org/instance/WP4925_r134614 http://rdf.wikipathways.org/Pathway/WP4925_r134614/WP/Interaction/iddf2d6bd6 "BCL2L11" (https://identifiers.org/ensembl/ENSG00000153094) and 
BCL2L11" (https://identifiers.org/ensembl/ENSG00000153094)
http://classic.wikipathways.org/instance/WP4925_r134614 http://rdf.wikipathways.org/Pathway/WP4925_r134614/WP/Interaction/id407f2004 "GADD35" (https://identifiers.org/ensembl/ENSG00000087074) and 
GADD35" (https://identifiers.org/ensembl/ENSG00000087074)
http://classic.wikipathways.org/instance/WP4925_r134614 http://rdf.wikipathways.org/Pathway/WP4925_r134614/WP/Interaction/id5b7aa56b "PMAIP1" (https://identifiers.org/ensembl/ENSG00000141682) and 
PMAIP1" (https://identifiers.org/ensembl/ENSG00000141682)
http://classic.wikipathways.org/instance/WP4925_r134614 http://rdf.wikipathways.org/Pathway/WP4925_r134614/WP/Interaction/id3012fc29 "BBC3" (https://identifiers.org/ensembl/ENSG00000105327) and 
BBC3" (https://identifiers.org/ensembl/ENSG00000105327)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations