wikipathways-collection

WikiPathways WP4919

• WikiPathways: WP4919 (classic)
• Species: Homo sapiens
• Scholia: WP4919

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 5
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 5

http://classic.wikipathways.org/instance/WP4919_r125017 AKT with datasource HGNC Accession number
http://classic.wikipathways.org/instance/WP4919_r125017 Nitrate reductase with datasource BRENDA
http://classic.wikipathways.org/instance/WP4919_r125017 IL-1B with datasource HomoloGene
http://classic.wikipathways.org/instance/WP4919_r125017 PI3K with datasource InterPro
http://classic.wikipathways.org/instance/WP4919_r125017 TNF-α with datasource HomoloGene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 3

• http://classic.wikipathways.org/instance/WP4919_r125017 “Oxidative Stress, Inflammatory Cytokines, UV” with graphId dde0a
• http://classic.wikipathways.org/instance/WP4919_r125017 “Cytokines” with graphId ffc71
• http://classic.wikipathways.org/instance/WP4919_r125017 “Proteolysis and IkB Degradation “ with graphId bf2f6

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels