wikipathways-collection

WikiPathways WP4900

• WikiPathways: WP4900 (classic)
• Species: Homo sapiens
• Scholia: WP4900

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 6
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

• http://classic.wikipathways.org/instance/WP4900_r134667 http://rdf.wikipathways.org/Pathway/WP4900_r134667/DataNode/c64c7 (LUF-5835)
• http://classic.wikipathways.org/instance/WP4900_r134667 http://rdf.wikipathways.org/Pathway/WP4900_r134667/DataNode/c8c98 (LUF-5845)
• http://classic.wikipathways.org/instance/WP4900_r134667 http://rdf.wikipathways.org/Pathway/WP4900_r134667/DataNode/a9774 (N6-3-methoxyl-4-hydroxybenzyl adenine riboside)
• http://classic.wikipathways.org/instance/WP4900_r134667 http://rdf.wikipathways.org/Pathway/WP4900_r134667/DataNode/d6131 (PSB-11)
• http://classic.wikipathways.org/instance/WP4900_r134667 http://rdf.wikipathways.org/Pathway/WP4900_r134667/DataNode/a1ac1 (PSB-603)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 6

• http://classic.wikipathways.org/instance/WP4900_r134667 “Pro-Inflammation” with graphId d1cad
• http://classic.wikipathways.org/instance/WP4900_r134667 “cations in general” with graphId b2d19
• http://classic.wikipathways.org/instance/WP4900_r134667 “cAMP up due to ADORA2B

->Bronchoconstriction ->Bronchospasm” with graphId bf51a

• http://classic.wikipathways.org/instance/WP4900_r134667 “cAMP up due to ADORA2A

->Coronary artery vasodilatation ->Decreased dopaminergic activity in CNS ->Inhibition of central neuron excitation.” with graphId bc109

• http://classic.wikipathways.org/instance/WP4900_r134667 “cAMP down due to ADORA3

->Cardiac muscle relaxation ->Smooth muscle contraction ->Cardioprotective in cardiac ischemia ->Inhibition of neutrophil degranulation” with graphId c94f6

• http://classic.wikipathways.org/instance/WP4900_r134667 “cAMP up due to ADORA1 ->Bronchoconstriction ->Afferent arteriolar constriction in Kidney -> decreased heart rate” with graphId c3793

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels