wikipathways-collection

WikiPathways WP4754

• WikiPathways: WP4754 (classic)
• Species: Homo sapiens
• Scholia: WP4754

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 43
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14

http://classic.wikipathways.org/instance/WP4754_r129677 MAPK8 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 SRC with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 STAT3 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 RAF1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 RPS6 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 ELK1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 Protein with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4754_r129677 IRAK4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4754_r129677 MAPK14 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 JUN with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 CREB1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 GSK3A with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 IL-18BP with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP4754_r129677 AKT1 with datasource NCBI Protein

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 43

• http://classic.wikipathways.org/instance/WP4754_r129677 “Mucosal mast cell differentiation Mucosal mast cell induced Th2 response” with graphId b1848
• http://classic.wikipathways.org/instance/WP4754_r129677 “Others” with graphId e01a3
• http://classic.wikipathways.org/instance/WP4754_r129677 “NU” with graphId d7fb7
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId a6b04
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId c0bb5
• http://classic.wikipathways.org/instance/WP4754_r129677 “MT” with graphId c279b
• http://classic.wikipathways.org/instance/WP4754_r129677 “Mucosal mast cell induced Th2 response” with graphId fe6f0
• http://classic.wikipathways.org/instance/WP4754_r129677 “Metabolic enzymes” with graphId b8df7
• http://classic.wikipathways.org/instance/WP4754_r129677 “NU” with graphId c84a8
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId b48bc
• http://classic.wikipathways.org/instance/WP4754_r129677 “Induces inflammatory response” with graphId a074c
• http://classic.wikipathways.org/instance/WP4754_r129677 “Immune process proteins” with graphId d4cb7
• http://classic.wikipathways.org/instance/WP4754_r129677 “NU” with graphId a120e
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId c9589
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId e709b
• http://classic.wikipathways.org/instance/WP4754_r129677 “NU” with graphId f2e10
• http://classic.wikipathways.org/instance/WP4754_r129677 “Receptor” with graphId cae59
• http://classic.wikipathways.org/instance/WP4754_r129677 “Regulates NK cell activity during Listeria infection” with graphId d5c99
• http://classic.wikipathways.org/instance/WP4754_r129677 “Activation of intrinsic and extrinsic proapoptotic signaling” with graphId d20ba
• http://classic.wikipathways.org/instance/WP4754_r129677 “induces ECM degradation and cardiac remodeling” with graphId cf288
• http://classic.wikipathways.org/instance/WP4754_r129677 “Matrix metalloproteases “ with graphId e5ea3
• http://classic.wikipathways.org/instance/WP4754_r129677 “Ligand” with graphId d54bb
• http://classic.wikipathways.org/instance/WP4754_r129677 “MT” with graphId eb8c9
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId f585d
• http://classic.wikipathways.org/instance/WP4754_r129677 “NU” with graphId fcedd
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId f871a
• http://classic.wikipathways.org/instance/WP4754_r129677 “Promotes Th1 response” with graphId ea19b
• http://classic.wikipathways.org/instance/WP4754_r129677 “Interleukins” with graphId a76f2
• http://classic.wikipathways.org/instance/WP4754_r129677 “Increases intestinal hyperpermeability and microbial translocation” with graphId fb0e4
• http://classic.wikipathways.org/instance/WP4754_r129677 “Cell adhesion molecules” with graphId cb18d
• http://classic.wikipathways.org/instance/WP4754_r129677 “Cell death regulators” with graphId a5d4a
• http://classic.wikipathways.org/instance/WP4754_r129677 “Pro-apoptotic reponse” with graphId a78dd
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId a3f32
• http://classic.wikipathways.org/instance/WP4754_r129677 “NU” with graphId a86f7
• http://classic.wikipathways.org/instance/WP4754_r129677 “Augments liver cell proliferation” with graphId a5d6f
• http://classic.wikipathways.org/instance/WP4754_r129677 “Cell cycle regulators” with graphId dae8f
• http://classic.wikipathways.org/instance/WP4754_r129677 “Tight-junction proteins” with graphId b5c14
• http://classic.wikipathways.org/instance/WP4754_r129677 “Enhances breast cancer cell migration” with graphId ff117
• http://classic.wikipathways.org/instance/WP4754_r129677 “NU” with graphId f5fd8
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId aa5aa
• http://classic.wikipathways.org/instance/WP4754_r129677 “CY” with graphId a3a02
• http://classic.wikipathways.org/instance/WP4754_r129677 “NU” with graphId c045d
• http://classic.wikipathways.org/instance/WP4754_r129677 “Induces NK cells and Th1 response” with graphId b034f

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels