wikipathways-collection

WikiPathways WP4747

• WikiPathways: WP4747 (classic)
• Species: Homo sapiens
• Scholia: WP4747

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 19
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 6
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 19

• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/cc718 (B cell survival and proliferation )
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/b260b (Bone mineralization)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/e2a4e (Cell adhesion)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/f2053 (Cell adhesion)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/d62d7 (Chemotactic activity in monocytes and basophils)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/c9112 (Chondrocyte proliferation, differentiation and cell adhesion)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/d2973 (Immune responses, inflammation and hematopoiesis )
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/aae06 (Inflammation, B-cell maturation)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/f6b5b (Leukocyte-endothelial cell adhesion)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/b8394 (NO)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/f145f (NOS)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/b0ac0 (Osteoclast differentiation)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/b26aa (Osteoclast differentiation)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/b7257 (Osteoclast differentiation)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/a92bd (Osteogenic differentiation)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/fcd7c (Pancreatic ductal adenocarcinoma tumorigenesis)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/efc64 (Promotes adhesion in vascular smooth muscle cells)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/c81e6 (Regulation of cell proliferation and differentiation)
• http://classic.wikipathways.org/instance/WP4747_r129741 http://rdf.wikipathways.org/Pathway/WP4747_r129741/DataNode/e75c9 (Tumor supressor)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 6

http://classic.wikipathways.org/instance/WP4747_r129741 "Ligand" with graphId be61d
http://classic.wikipathways.org/instance/WP4747_r129741 "NU" with graphId c38fd
http://classic.wikipathways.org/instance/WP4747_r129741 "CY" with graphId c8f71
http://classic.wikipathways.org/instance/WP4747_r129741 "NU" with graphId f15e1
http://classic.wikipathways.org/instance/WP4747_r129741 "CY" with graphId eaa8c
http://classic.wikipathways.org/instance/WP4747_r129741 "Receptor" with graphId a92b3