wikipathways-collection

WikiPathways WP4597

• WikiPathways: WP4597 (classic)
• Species: Arabidopsis thaliana

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 82
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 82

• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/fc311 (2-(Methylsulfinyl)ethyl-glucosinolate)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/a0e6f (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/a1955 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/a1e51 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/a666f (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/a8f35 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b06e8 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b0ac7 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b1363 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b28fb (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b5958 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b8734 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b9b1c (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/bc676 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/bdd03 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/bf60f (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/bf9be (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/bfead (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c144d (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c1901 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c4ef4 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c4fd7 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c527e (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c5706 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c9c4a (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/ca222 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/cad27 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/cb3dc (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/cc04e (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/ce746 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/ce8dd (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/cfd7d (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/d24df (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/d4838 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/d51f0 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/d8ae5 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/dd241 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/de939 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/dfb53 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/e2c2a (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/e534e (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/e9432 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/eb644 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/ec364 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/ee69f (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/ef8e3 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/f09b1 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/f0cad (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/f2896 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/f70c0 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/f72d6 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/f77cf (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/f9c3d (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/fab9f (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/fada0 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/fe995 (Catalyst)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/aa9de (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/aabf7 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/adf88 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b236e (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b2bf0 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/b7b74 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/bfe8f (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c4d51 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c4f01 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/c6487 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/cb711 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/cda13 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/d34b8 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/d5430 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/d7a0b (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/d7baf (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/da435 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/dc95b (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/e0f0d (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/e83bd (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/ed9ee (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/ef12c (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/f475b (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/fd484 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/fdd88 (Metabolite)
• http://classic.wikipathways.org/instance/WP4597_r118602 http://rdf.wikipathways.org/Pathway/WP4597_r118602/DataNode/fe4bc (Metabolite)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP4597_r118602 CYP79F1 with datasource TAIR

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping