wikipathways-collection

WikiPathways WP4463

• WikiPathways: WP4463 (classic)
• Species: Homo sapiens
• Scholia: WP4463

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 8
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 4
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 8

• http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/DataNode/d86c4 (AC)
• http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/DataNode/e62f2 (AC)
• http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/DataNode/b2e9c (LDL)
• http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/DataNode/aabe0 (Receptor?)
• http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/DataNode/c8981 (Receptor?)
• http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/DataNode/d49bb (Receptor?)
• http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/DataNode/d8aef (Receptor?)
• http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/DataNode/e8fa2 (Receptor?)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 4

http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/WP/Interaction/id8a3eebc4 "Cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
Cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/WP/Interaction/idf4fbde59 "Androstenedione" (https://identifiers.org/chebi/CHEBI:16422) and 
Androstenedione" (https://identifiers.org/chebi/CHEBI:16422)
http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/WP/Interaction/cc022 "Testosterone" (https://identifiers.org/chebi/CHEBI:17347) and 
Testosterone" (https://identifiers.org/chebi/CHEBI:17347)
http://classic.wikipathways.org/instance/WP4463_r135645 http://rdf.wikipathways.org/Pathway/WP4463_r135645/WP/Interaction/cedc1 "Progesterone" (https://identifiers.org/chebi/CHEBI:17026) and 
Progesterone" (https://identifiers.org/chebi/CHEBI:17026)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations