wikipathways-collection

WikiPathways WP4351

• WikiPathways: WP4351 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
  • mediawikiLinks: .x we found 1 problem(s):
    • Pathways of which the description may contain MediaWiki-style links: 1
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14

http://classic.wikipathways.org/instance/WP4351_r126146 Elovl6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Elovl5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Fads2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Scd2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Fasn with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Elovl2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Elovl3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Acsl4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Acot1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Fads1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Acot2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Acsl3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Elovl1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4351_r126146 Acsl1 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

PathwayTests.mediawikiLinks

Pathways of which the description may contain MediaWiki-style links: 1

[["homepage"],
["http://classic.wikipathways.org/instance/WP4351_r126146"]
]