wikipathways-collection

WikiPathways WP4258

• WikiPathways: WP4258 (classic)
• Species: Homo sapiens
• Scholia: WP4258

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

• http://classic.wikipathways.org/instance/WP4258_r127462 http://rdf.wikipathways.org/Pathway/WP4258_r127462/DataNode/b93e9 (ASBEL)
• http://classic.wikipathways.org/instance/WP4258_r127462 http://rdf.wikipathways.org/Pathway/WP4258_r127462/DataNode/daebe (CCAL)
• http://classic.wikipathways.org/instance/WP4258_r127462 http://rdf.wikipathways.org/Pathway/WP4258_r127462/DataNode/d690b (MYU)
• http://classic.wikipathways.org/instance/WP4258_r127462 http://rdf.wikipathways.org/Pathway/WP4258_r127462/DataNode/dfa16 (RBM5-AS1)
• http://classic.wikipathways.org/instance/WP4258_r127462 http://rdf.wikipathways.org/Pathway/WP4258_r127462/DataNode/f85ce (lnc34A)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP4258_r127462 "Proliferation
Migration, invasion
Stem cell maintenance
" with graphId db2f1

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP4258_r127462 http://rdf.wikipathways.org/Pathway/WP4258_r127462/WP/Interaction/id434361a7 "NKD1" (https://identifiers.org/ensembl/ENSG00000140807) and 
NKD1" (https://identifiers.org/ensembl/ENSG00000140807)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations