wikipathways-collection

WikiPathways WP4198

• WikiPathways: WP4198 (classic)
• Species: Mycobacterium tuberculosis

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP4198_r129332 http://rdf.wikipathways.org/Pathway/WP4198_r129332/DataNode/c7c49 (AccD4)
• http://classic.wikipathways.org/instance/WP4198_r129332 http://rdf.wikipathways.org/Pathway/WP4198_r129332/DataNode/c6958 (FabG1)
• http://classic.wikipathways.org/instance/WP4198_r129332 http://rdf.wikipathways.org/Pathway/WP4198_r129332/DataNode/f500f (Fatty acids (C26))
• http://classic.wikipathways.org/instance/WP4198_r129332 http://rdf.wikipathways.org/Pathway/WP4198_r129332/DataNode/d1eb8 (Ketomycolate)
• http://classic.wikipathways.org/instance/WP4198_r129332 http://rdf.wikipathways.org/Pathway/WP4198_r129332/DataNode/cb68c (Malonyl-AcpM)
• http://classic.wikipathways.org/instance/WP4198_r129332 http://rdf.wikipathways.org/Pathway/WP4198_r129332/DataNode/a2cd5 (Meromycolates (C56))
• http://classic.wikipathways.org/instance/WP4198_r129332 http://rdf.wikipathways.org/Pathway/WP4198_r129332/DataNode/a5547 (Pks13)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2

http://classic.wikipathways.org/instance/WP4198_r129332 AcpM with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP4198_r129332 InhA with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping