wikipathways-collection

WikiPathways WP4183

• WikiPathways: WP4183 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 8
  • noProteinProteinConversions: .x we found 1 problem(s):
    • Unexpected protein-protein conversions: 1
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Possible MIM translocation

Interactions between identical nodes: 8

• http://classic.wikipathways.org/instance/WP4183_r118998 http://rdf.wikipathways.org/Pathway/WP4183_r118998/WP/Interaction/id261cbb5e “K+” (https://identifiers.org/hmdb/HMDB0000586) and K+” (https://identifiers.org/hmdb/HMDB0000586)
• http://classic.wikipathways.org/instance/WP4183_r118998 http://rdf.wikipathways.org/Pathway/WP4183_r118998/WP/Interaction/idcc0411c “Na+” (https://identifiers.org/hmdb/HMDB0000588) and Na+” (https://identifiers.org/hmdb/HMDB0000588)
• http://classic.wikipathways.org/instance/WP4183_r118998 http://rdf.wikipathways.org/Pathway/WP4183_r118998/WP/Interaction/id1d935e84 “Na+” (https://identifiers.org/hmdb/HMDB0000588) and Na+” (https://identifiers.org/hmdb/HMDB0000588)
• http://classic.wikipathways.org/instance/WP4183_r118998 http://rdf.wikipathways.org/Pathway/WP4183_r118998/WP/Interaction/d0f2b “Cl-“ (https://identifiers.org/hmdb/HMDB0000492) and Cl-“ (https://identifiers.org/hmdb/HMDB0000492)
• http://classic.wikipathways.org/instance/WP4183_r118998 http://rdf.wikipathways.org/Pathway/WP4183_r118998/WP/Interaction/id61587368 “K+” (https://identifiers.org/hmdb/HMDB0000586) and K+” (https://identifiers.org/hmdb/HMDB0000586)
• http://classic.wikipathways.org/instance/WP4183_r118998 http://rdf.wikipathways.org/Pathway/WP4183_r118998/WP/Interaction/d849d “Cl-“ (https://identifiers.org/hmdb/HMDB0000492) and Cl-“ (https://identifiers.org/hmdb/HMDB0000492)
• http://classic.wikipathways.org/instance/WP4183_r118998 http://rdf.wikipathways.org/Pathway/WP4183_r118998/WP/Interaction/id5b01cab1 “Cl-“ (https://identifiers.org/hmdb/HMDB0000492) and Cl-“ (https://identifiers.org/hmdb/HMDB0000492)
• http://classic.wikipathways.org/instance/WP4183_r118998 http://rdf.wikipathways.org/Pathway/WP4183_r118998/WP/Interaction/a85b6 “Cl-“ (https://identifiers.org/hmdb/HMDB0000492) and Cl-“ (https://identifiers.org/hmdb/HMDB0000492)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

Protein converted into another protein

Unexpected protein-protein conversions: 1

• Mus musculus http://classic.wikipathways.org/instance/WP4183_r118998 -> https://identifiers.org/uniprot/Q9Z1W9 https://identifiers.org/uniprot/P59158 http://rdf.wikipathways.org/Pathway/WP4183_r118998/WP/Interaction/id31e62b73

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/noProteinProteinConversions