wikipathways-collection

WikiPathways WP3634

• WikiPathways: WP3634 (classic)
• Species: Homo sapiens
• Scholia: WP3634

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 35
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP3634_r116602 AS160p with datasource PATO

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 35

• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v1e
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v4h
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v9f2
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v4e
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v1r
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v2basal
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v2d
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v7f
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v5a
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v6b1
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId ce311
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v1c
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v1basal
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v1g
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v2c
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v4b
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v9b2
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v6f1
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v9f1
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v3b
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v3a
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v2b
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v7b
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v4c
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v1a
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v1d
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v9b1
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v2g
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v5c
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v4a
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v2a
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v4f
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v5d
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v2f
• http://classic.wikipathways.org/instance/WP3634_r116602 “” with graphId v5b

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels