wikipathways-collection

WikiPathways WP3538

• WikiPathways: WP3538 (classic)
• Species: Escherichia coli

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .x we found 1 problem(s):
    • Unexpected non-metabolite to metabolite conversions: 1
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .x we found 1 problem(s):
    • Unexpected protein-protein conversions: 1
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

No non-metabolite to metabolite conversions

Unexpected non-metabolite to metabolite conversions: 1

• Escherichia coli http://classic.wikipathways.org/instance/WP3538_r106103 → https://identifiers.org/uniprot/P0AEZ3 https://identifiers.org/hmdb/HMDB0001429 http://rdf.wikipathways.org/Pathway/WP3538_r106103/WP/Interaction/idc1d44eec

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/noNonMetaboliteToMetaboliteConversions

Protein converted into another protein

Unexpected protein-protein conversions: 1

• Escherichia coli http://classic.wikipathways.org/instance/WP3538_r106103 -> https://identifiers.org/uniprot/P0AEZ3 https://identifiers.org/uniprot/P0A734 http://rdf.wikipathways.org/Pathway/WP3538_r106103/WP/Interaction/idd65c447

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/noProteinProteinConversions