wikipathways-collection

WikiPathways WP28

• WikiPathways: WP28 (classic)
• Species: Homo sapiens
• Scholia: WP28

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 46
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
  • mediawikiLinks: .x we found 1 problem(s):
    • Pathways of which the description may contain MediaWiki-style links: 1
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 46

http://classic.wikipathways.org/instance/WP28_r137541 Selenbp1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 SelH with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Scly with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Sep15 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP28_r137541 NFKB-p105 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Cystathionine g-lyase with datasource RefSeq
http://classic.wikipathways.org/instance/WP28_r137541 SEPN1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Pstk with datasource UniProtKB
http://classic.wikipathways.org/instance/WP28_r137541 SelS with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 SBP2 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP28_r137541 GPX1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Sla with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Sephs2 with datasource RefSeq
http://classic.wikipathways.org/instance/WP28_r137541 SEPP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 DIO1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 TXNRD3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 NFKB-p65 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 DIO2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 SelT with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 SelV with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Fabp1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Rpl30 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 SPS2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 SelK with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 GPX4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Pouf2f1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP28_r137541 SelI with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 eEFSec with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Sephs1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP28_r137541 Sars2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Secp43 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 GPX6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Nfe2l2 with datasource RefSeq
http://classic.wikipathways.org/instance/WP28_r137541 Sars with datasource UniProtKB
http://classic.wikipathways.org/instance/WP28_r137541 SepX1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Sp3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 TXNRD1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 GPX3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 GPX2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 Sp1 with datasource RefSeq
http://classic.wikipathways.org/instance/WP28_r137541 SepW with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 CREM with datasource UniProtKB
http://classic.wikipathways.org/instance/WP28_r137541 TXNRD2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 SelM with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 DIO3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP28_r137541 SelO with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

PathwayTests.mediawikiLinks

Pathways of which the description may contain MediaWiki-style links: 1

[["homepage"],
["http://classic.wikipathways.org/instance/WP28_r137541"]
]