wikipathways-collection

WikiPathways WP2526

• WikiPathways: WP2526 (classic)
• Species: Homo sapiens
• Scholia: WP2526

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 8
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 8

• http://classic.wikipathways.org/instance/WP2526_r123068 http://rdf.wikipathways.org/Pathway/WP2526_r123068/DataNode/f3727 ( Ca

c h a n n e l)

• http://classic.wikipathways.org/instance/WP2526_r123068 http://rdf.wikipathways.org/Pathway/WP2526_r123068/DataNode/ea16a ( Na+/H+

e x c h a n g e r)

• http://classic.wikipathways.org/instance/WP2526_r123068 http://rdf.wikipathways.org/Pathway/WP2526_r123068/DataNode/c3d80 (Akt Pathway)
• http://classic.wikipathways.org/instance/WP2526_r123068 http://rdf.wikipathways.org/Pathway/WP2526_r123068/DataNode/e7cfb (Cell Migration)
• http://classic.wikipathways.org/instance/WP2526_r123068 http://rdf.wikipathways.org/Pathway/WP2526_r123068/DataNode/f9a51 (Cell proliferation)
• http://classic.wikipathways.org/instance/WP2526_r123068 http://rdf.wikipathways.org/Pathway/WP2526_r123068/DataNode/f9b1a (Degradation)
• http://classic.wikipathways.org/instance/WP2526_r123068 http://rdf.wikipathways.org/Pathway/WP2526_r123068/DataNode/b4da8 (Filopodia Formation)
• http://classic.wikipathways.org/instance/WP2526_r123068 http://rdf.wikipathways.org/Pathway/WP2526_r123068/DataNode/f1a94 (Lamellipodia Formation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP2526_r123068 NFKB1 with datasource KEGG Genes

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping