wikipathways-collection

WikiPathways WP2433

• WikiPathways: WP2433 (classic)
• Species: Rattus norvegicus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 3
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 19
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 3

• http://classic.wikipathways.org/instance/WP2433_r120271 http://rdf.wikipathways.org/Pathway/WP2433_r120271/DataNode/e6dba (FBR)
• http://classic.wikipathways.org/instance/WP2433_r120271 http://rdf.wikipathways.org/Pathway/WP2433_r120271/DataNode/dc8f7 (IL8)
• http://classic.wikipathways.org/instance/WP2433_r120271 http://rdf.wikipathways.org/Pathway/WP2433_r120271/DataNode/c22ae (ROS)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 19

http://classic.wikipathways.org/instance/WP2433_r120271 "Glial Scar" with graphId ece06
http://classic.wikipathways.org/instance/WP2433_r120271 "Cytotoxic" with graphId ead0d
http://classic.wikipathways.org/instance/WP2433_r120271 "Proliferation" with graphId e84a4
http://classic.wikipathways.org/instance/WP2433_r120271 "Neuron & 
Oligodendrocyte
Apoptosis/Necrosis" with graphId bb029
http://classic.wikipathways.org/instance/WP2433_r120271 "Activated Microglia/
Macrophages" with graphId beb8a
http://classic.wikipathways.org/instance/WP2433_r120271 "Astrocyte Gliosis" with graphId d3b7f
http://classic.wikipathways.org/instance/WP2433_r120271 "Cytotoxic" with graphId fc9f4
http://classic.wikipathways.org/instance/WP2433_r120271 "T-Cells" with graphId b7883
http://classic.wikipathways.org/instance/WP2433_r120271 "Demyelination" with graphId c6d3a
http://classic.wikipathways.org/instance/WP2433_r120271 "Monocyte Chemoattractants" with graphId bd92b
http://classic.wikipathways.org/instance/WP2433_r120271 "C3 Toxin" with graphId d58e5
http://classic.wikipathways.org/instance/WP2433_r120271 "Chondroitin Sulfate 
Proteoglycans" with graphId ead30
http://classic.wikipathways.org/instance/WP2433_r120271 "C1Q and Fc receptive cells" with graphId e85e7
http://classic.wikipathways.org/instance/WP2433_r120271 "Antibody Release" with graphId a2fe7
http://classic.wikipathways.org/instance/WP2433_r120271 "TOXIC FERROUS
IRON" with graphId fc918
http://classic.wikipathways.org/instance/WP2433_r120271 "Axonal Retraction" with graphId fa027
http://classic.wikipathways.org/instance/WP2433_r120271 "Activated Microglia/
Macrophages" with graphId ec911
http://classic.wikipathways.org/instance/WP2433_r120271 "B Cell Stimulating" with graphId db650
http://classic.wikipathways.org/instance/WP2433_r120271 "Microglia" with graphId c267c