wikipathways-collection

WikiPathways WP1995

• WikiPathways: WP1995 (classic)
• Species: Homo sapiens
• Scholia: WP1995

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .. all OK!
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 1
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 8
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Datanodes of unknown type

The following DataNodes have Unknown @Type: 1

• http://classic.wikipathways.org/instance/WP1995_r128781 http://rdf.wikipathways.org/Pathway/WP1995_r128781/DataNode/ab531 (Hypoxia)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 8

http://classic.wikipathways.org/instance/WP1995_r128781 "cGMP
signaling" with graphId b51a2
http://classic.wikipathways.org/instance/WP1995_r128781 "Diet" with graphId fd200
http://classic.wikipathways.org/instance/WP1995_r128781 "Formation of
nitrosylating
species" with graphId fc60c
http://classic.wikipathways.org/instance/WP1995_r128781 "Increased risk
of carcinogenesis" with graphId f59f5
http://classic.wikipathways.org/instance/WP1995_r128781 "Increased
mitochondrial
efficiency" with graphId d04b0
http://classic.wikipathways.org/instance/WP1995_r128781 "Reduced risk of
cardiovascular disease" with graphId bea5d
http://classic.wikipathways.org/instance/WP1995_r128781 "Vasodilation" with graphId d1bc8
http://classic.wikipathways.org/instance/WP1995_r128781 "Anti-inflammatory
effects" with graphId c5e9c