wikipathways-collection

WikiPathways WP1302

• WikiPathways: WP1302 (classic)
• Species: Rattus norvegicus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 31
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 4
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 31

• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/c8f50 (2-Hydroxyestrone-3-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/accb8 (2-Methoxyestradiol-3-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/bff50 (2-hydroxy-estradiol-2-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/ddd79 (2-hydroxy-estradiol-sulfate)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/b4e39 (2-hydroxyestradiol-3-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/b395c (4-Hydroxyestradiol-3-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/a8c52 (4-Methoxyestradiol-3-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/fcdea (4-Methoxyestrone)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/d314c (4-Methoxyestrone-3-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/ec8e7 (4-hydroxy-estradiol-4-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/f0843 (4-hydroxy-estradiol-sulfate)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/a5224 (4-hydroxyestradiol)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/c4edd (4-hydroxyestrone)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/c952c (4-hydroxyestrone-3-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/f6c06 (ARSD)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/b6fe2 (CYP3A4)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/dceef (CYP3A4)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/ba9ff (Estradiol)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/b4a78 (Estradiol sulfate)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/e3953 (Estradiol-17-glucuronide)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/eeee5 (Estradiol-2,3-quinone)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/e31ce (Estradiol-2,3-semiquinone)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/e0929 (Estradiol-3,4-quinone)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/c8dd7 (Estradiol-3,4-semiquinone)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/ca198 (Estrone-2,3-semiquinone)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/eb843 (Estrone-3,4-semiquinone)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/da5b9 (GSTA1)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/b0d5d (UGT2B7)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/c0644 (UGT2B7)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/db398 (UGT2B7)
• http://classic.wikipathways.org/instance/WP1302_r106958 http://rdf.wikipathways.org/Pathway/WP1302_r106958/DataNode/f9647 (UGT2B7)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 4

http://classic.wikipathways.org/instance/WP1302_r106958 Sts with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1302_r106958 UGT1A9 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1302_r106958 Ugt1a2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1302_r106958 Ugt1a1 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping