wikipathways-collection

WikiPathways WP1200

• WikiPathways: WP1200 (classic)
• Species: Canis familiaris

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 18
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 9
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 18

• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/bca (14-3-3)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/e2ac5 (APC/C)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/e61c6 (APC/C)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/dec (ARF)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/ece (BUB1)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/e30 (CCNB1)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/ce68a (E2F)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/f1a (E2F2)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/af6 (EP300)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/f99 (GADD45A)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/a3089 (GeneProduct)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/baeaf (MCM)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/b71 (MEN)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/d9002 (ORC)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/c86 (PTTG2)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/a10 (PTTG3)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/c3caf (SCF)
• http://classic.wikipathways.org/instance/WP1200_r111030 http://rdf.wikipathways.org/Pathway/WP1200_r111030/DataNode/d80af (SCF)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 9

http://classic.wikipathways.org/instance/WP1200_r111030 MAD2L1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1200_r111030 CDC2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1200_r111030 CDK2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1200_r111030 CDC20 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1200_r111030 CDKN2A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1200_r111030 ORC1L with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1200_r111030 MCM7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1200_r111030 MPEG1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1200_r111030 ATR with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping