wikipathways-collection

WikiPathways WP1185

• WikiPathways: WP1185 (classic)
• Species: Canis familiaris

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 12
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 8
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 12

• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/a16 (ACTN)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/a80 (CRK)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/d66 (HRAS)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/b06 (ITGA3)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/e0d (MAP2K5)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/ee2 (MYO)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/ab0 (MYO-P)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/e6a (PI5K)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/fcc (RAC3)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/e65 (SORBS1)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/b0b (VCL)
• http://classic.wikipathways.org/instance/WP1185_r71477 http://rdf.wikipathways.org/Pathway/WP1185_r71477/DataNode/f05 (p110)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 8

http://classic.wikipathways.org/instance/WP1185_r71477 ITGA6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1185_r71477 CDC42 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1185_r71477 PAK6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1185_r71477 MAP2K2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1185_r71477 TLN1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1185_r71477 ITGAD with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1185_r71477 PAK3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1185_r71477 CAPN3 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping