wikipathways-collection

WikiPathways WP1105

• WikiPathways: WP1105 (classic)
• Species: Canis familiaris

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 8
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 8

• http://classic.wikipathways.org/instance/WP1105_r87031 http://rdf.wikipathways.org/Pathway/WP1105_r87031/DataNode/e6c (CEBPA)
• http://classic.wikipathways.org/instance/WP1105_r87031 http://rdf.wikipathways.org/Pathway/WP1105_r87031/DataNode/c55 (CEBPB)
• http://classic.wikipathways.org/instance/WP1105_r87031 http://rdf.wikipathways.org/Pathway/WP1105_r87031/DataNode/f62 (FRZB)
• http://classic.wikipathways.org/instance/WP1105_r87031 http://rdf.wikipathways.org/Pathway/WP1105_r87031/DataNode/de5 (GADD45A)
• http://classic.wikipathways.org/instance/WP1105_r87031 http://rdf.wikipathways.org/Pathway/WP1105_r87031/DataNode/f9e (GH1)
• http://classic.wikipathways.org/instance/WP1105_r87031 http://rdf.wikipathways.org/Pathway/WP1105_r87031/DataNode/f98 (IRS3L)
• http://classic.wikipathways.org/instance/WP1105_r87031 http://rdf.wikipathways.org/Pathway/WP1105_r87031/DataNode/bd9 (MEF2D)
• http://classic.wikipathways.org/instance/WP1105_r87031 http://rdf.wikipathways.org/Pathway/WP1105_r87031/DataNode/a7f (MIXL1)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14

http://classic.wikipathways.org/instance/WP1105_r87031 DVL1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 RORA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 BMP3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 PTGIS with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 BMP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 ADFP with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 TWIST1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 CISD1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 CEBPD with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 SOCS1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 NAMPT with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 PLIN with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 FOXC2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1105_r87031 NRIP1 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping