sr24-curation

WikiPathways WP4815

• WikiPathways: WP4815 (classic)
• Species: Homo sapiens
• Scholia: WP4815

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 63
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests: all 6 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 35
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests
  • keggWithoutMapping: .. all OK!
  • pubchemCIDWithoutMapping: .. all OK!
  • hmdbWithoutMapping: .. all OK!
  • casWithoutMapping: .. all OK!
  • wikDataTypo: .. all OK!
  • duplicateWikidataMappings: .. all OK!
  • wikidataIdentifiersWrong: .. all OK!
  • chemspiderCIDWithoutMapping: .. all OK!
  • lipidMapsWithoutMapping: .. all OK!
  • kNApSAcKWithoutMapping: .. all OK!
  • replaceWikipedia: .. all OK!
  • chebiWithoutMapping_Reactome: .. all OK!
  • chebiWithoutMapping: .x we found 1 problem(s):
    • ChEBI identifiers without Wikidata mappings: 2
  • inchikeyWithoutMapping: .. all OK!
  • retiredIdentifiers: .. all OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 3

Fails

CovidDiseaseMapsTests.interactionsWithoutReferences

Interactions without literature references: 63

http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id53b83bdf
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idf044dee1
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idc6b74a14
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id48c3f01d
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id8e3b367b
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id8d472b33
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id9c92d9c
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/ide97d7ccf
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idd691d41
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id6a4a720a
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idd559940d
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id16988fa7
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idb9b57e34
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id20c8db1d
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id6b494a33
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id217a55aa
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/d64d3
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idb007170
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id3085410e
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id11a50d63
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idbb44a8c
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idb574f8fe
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id1548b2f4
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idb8ba758c
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id15642e56
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id599e87c2
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/ide8206dcc
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idd4958a78
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id7c5739d4
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id2a6f471f
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id4cda744a
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idecf079ef
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id227c03b
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id8bf27d41
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id17af408d
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idacd8114e
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idd0980eda
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id7ace4d3f
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idd1ecf1c7
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idf8e55dc3
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id22424eca
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idc00af1d1
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id1b2f7122
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idfbc0ad6a
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id745c6310
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idc7da463c
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idf6d329eb
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id91080eb7
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id53c2342f
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id87df1a52
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id26e177f0
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/ide4237b60
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idea1a6e21
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id76db6a84
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/ide18b0753
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/iddc5f5a05
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id21a64286
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idd833f7ec
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/id5acc0ab8
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idef813c68
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idaf57f8e
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idd965a229
http://classic.wikipathways.org/instance/WP4815_r136166 -> http://rdf.wikipathways.org/Pathway/WP4815_r136166/WP/Interaction/idbdf3da71

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 35

http://classic.wikipathways.org/instance/WP4815_r136166 "GlcAbeta" with graphId f16e8
http://classic.wikipathways.org/instance/WP4815_r136166 "GalNAc" with graphId f3ea6
http://classic.wikipathways.org/instance/WP4815_r136166 "Chondroitin sulfate biosynthesis" with graphId dae82
http://classic.wikipathways.org/instance/WP4815_r136166 "Keratan sulfate biosynthesis" with graphId f7d7a
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId de785
http://classic.wikipathways.org/instance/WP4815_r136166 "GalbetaGlcNAcbeta" with graphId cf378
http://classic.wikipathways.org/instance/WP4815_r136166 "Galbeta" with graphId ae56f
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId cab41
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId b40fb
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcNalpha" with graphId c5917
http://classic.wikipathways.org/instance/WP4815_r136166 "GalNAc" with graphId dbdc3
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcAbeta" with graphId bc394
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId c051f
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId b6c38
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcNAcalpha" with graphId b89b1
http://classic.wikipathways.org/instance/WP4815_r136166 "GalNAcbeta" with graphId a7fd5
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId d535f
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcNAcalpha" with graphId fa0e6
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcAbeta" with graphId abff9
http://classic.wikipathways.org/instance/WP4815_r136166 "IdoAbeta" with graphId a9fea
http://classic.wikipathways.org/instance/WP4815_r136166 "Galbeta" with graphId d96f0
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId c6fad
http://classic.wikipathways.org/instance/WP4815_r136166 "IdoAbeta" with graphId a3754
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcAalpha" with graphId f31e0
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcNAcbeta" with graphId c142d
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcAbeta" with graphId da886
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcNAcbeta" with graphId c62ea
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId f1136
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcAbeta" with graphId f3110
http://classic.wikipathways.org/instance/WP4815_r136166 "GlcNAc" with graphId d4158
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId b3336
http://classic.wikipathways.org/instance/WP4815_r136166 "Heparan sulfate biosynthesis" with graphId c3229
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId be249
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId a3dfb
http://classic.wikipathways.org/instance/WP4815_r136166 "S" with graphId c644c

ChEBI identifier without a match in Wikidata

ChEBI identifiers without Wikidata mappings: 2

https://identifiers.org/chebi/CHEBI:132153 (hyaluronan) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4815_r136166 ; 
https://identifiers.org/chebi/CHEBI:37397 (Chondroitin sulfate) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4815_r136166 ; 

More details at https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping