sr24-curation

WikiPathways WP4718

• WikiPathways: WP4718 (classic)
• Species: Homo sapiens
• Scholia: WP4718

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 63
  • missingHGNC: .. all OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 6
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .. all OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 3

Fails

Interactions without references

Interactions without literature references: 63

• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id2666b4a6
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id3a9081b8
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/c3a10
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idf345d5ea
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id48a58096
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/ebd88
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/a1fba
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/ide7db421a
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id85b559d0
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idd80c8fa5
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idcb91214
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idb494995e
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id4f69d5a
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id75fcb1bb
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idcd507b5e
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id749202e1
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id57690b3f
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/a20b4
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id3eed3a19
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/ida6c1d920
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id2e5582ce
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id482fbab5
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/dcad8
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idbbb5528b
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/a0c53
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id7174efd
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idc3892106
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id2ae1dd57
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idae71aeb2
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id74e4bb64
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idc477ee2a
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id702c4126
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idbf581684
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id6bf4d8b9
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id318cc971
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/b4ade
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id551b71e9
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id2c66cd62
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id874dcb8d
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id61d37689
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id19d7a456
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idc47b154c
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/bdcc7
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idb3de7a39
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id58c774ca
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id52f0d840
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/ida2f1181b
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/ida58d2ffd
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/ide48549e2
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/aad93
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id8a84238a
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id4755548d
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id592ed15c
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idad096071
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id10e71238
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id115479da
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id611397ba
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id322b7e88
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id5218a753
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/idb27ed89f
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id6ad03ab
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id7876c265
• http://classic.wikipathways.org/instance/WP4718_r125822 -> http://rdf.wikipathways.org/Pathway/WP4718_r125822/WP/Interaction/id3919ac31

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Data nodes without an identifier

The following DataNodes have no identifier: 6

• http://classic.wikipathways.org/instance/WP4718_r125822 http://rdf.wikipathways.org/Pathway/WP4718_r125822/DataNode/c48d2 (Acot1)
• http://classic.wikipathways.org/instance/WP4718_r125822 http://rdf.wikipathways.org/Pathway/WP4718_r125822/DataNode/b8d73 (Bloch Pathway)
• http://classic.wikipathways.org/instance/WP4718_r125822 http://rdf.wikipathways.org/Pathway/WP4718_r125822/DataNode/d2b5e (Fatty acid biosynthesis)
• http://classic.wikipathways.org/instance/WP4718_r125822 http://rdf.wikipathways.org/Pathway/WP4718_r125822/DataNode/e6e39 (Idi2)
• http://classic.wikipathways.org/instance/WP4718_r125822 http://rdf.wikipathways.org/Pathway/WP4718_r125822/DataNode/e6c4d (Kandutsch- Russell Pathway)
• http://classic.wikipathways.org/instance/WP4718_r125822 http://rdf.wikipathways.org/Pathway/WP4718_r125822/DataNode/a743a (Scd2)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

All metabolites are involved in interactions

Found metabolites without interaction: 6

• https://identifiers.org/wikipathways/WP4718 has an metabolite not linked to an interaction: 9Z-palmitoleic acid
• https://identifiers.org/wikipathways/WP4718 has an metabolite not linked to an interaction: CE(18:1)
• https://identifiers.org/wikipathways/WP4718 has an metabolite not linked to an interaction: Oleic acid
• https://identifiers.org/wikipathways/WP4718 has an metabolite not linked to an interaction: Acyl-CoA
• https://identifiers.org/wikipathways/WP4718 has an metabolite not linked to an interaction: CE(16:1)
• https://identifiers.org/wikipathways/WP4718 has an metabolite not linked to an interaction: Cholesteryl esters (CE)

More details at https://www.wikipathways.org/WikiPathwaysCurator/IEMPathwayTests/allMetabolitesInteract