sr24-curation

WikiPathways WP143

WikiPathways: WP143 (classic)
Species: Homo sapiens
Scholia: WP143
Tests
CASMetabolitesTests: all 2 tests OK!
ChEBIMetabolitesTests: all 5 tests OK!
ChemSpiderTests: all 2 tests OK!
CovidDiseaseMapsTests
- interactionsWithoutReferences: .x we found 1 problem(s):
  - Interactions without literature references: 46
- missingHGNC: .. all OK!
DataNodesTests: all 5 tests OK!
EnsemblTests: all 5 tests OK!
GeneTests: all 4 tests OK!
GeneralTests: all 15 tests OK!
HMDBMetabolitesTests: all 2 tests OK!
HMDBSecMetabolitesTests: all 3 tests OK!
IEMPathwayTests
- allMetabolitesInteract: .x we found 1 problem(s):
  - Found metabolites without interaction: 1
- metabolicConversions: .. all OK!
- catalystsWithCommonDataSource: .. all OK!
- metabolicConversionIdentifiersCommon: .. all OK!
- diseasesHaveIdentifiers: .. all OK!
- omimIdentifiers: .. all OK!
InteractionTests: all 8 tests OK!
KEGGMetaboliteTests: all 2 tests OK!
LIPIDMAPSTests: all 1 tests OK!
MetaboliteStructureTests: all 1 tests OK!
MetabolitesTests
- metaboliteAlsoOtherType: .. all OK!
- casNumbersNotMarkedAsMetabolite: .. all OK!
- chemspiderIDsNotMarkedAsMetabolite: .. all OK!
- HMDBIDsNotMarkedAsMetabolite: .. all OK!
- KEGGIDsNotMarkedAsMetabolite: .. all OK!
- metabolitesWithAnEnsembleID: .. all OK!
- metabolitesWithAnEntrezGeneID: .. all OK!
- metabolitesWithDbButNoIdentifier: .. all OK!
- metabolitesWithIdentifierButNoDb: .. all OK!
- ChEBIIDsNotMarkedAsMetabolite: .. all OK!
- PubChemIDsNotMarkedAsMetabolite: .. all OK!
- PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
- PubChemIDsNotNumbers: .. all OK!
- PubChemSubstanceIDsNotNumbers: .. all OK!
- tooManyInChIKeys: .x we found 1 problem(s):
  - Non-zero count of metabolites with more than one InChIKey: 13
OudatedDataSourcesTests: all 24 tests OK!
PathwayTests: all 7 tests OK!
ProteinsTests: all 2 tests OK!
PubChemMetabolitesTests: all 3 tests OK!
ReferencesTests: all 6 tests OK!
UniProtTests: all 5 tests OK!
WikidataTests: all 15 tests OK!

Summary

Number of test classes: 23
Number of tests: 140
Number of assertions: 281
Number of fails: 3

Fails

Interactions without references

Interactions without literature references: 46

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

All metabolites are involved in interactions

Found metabolites without interaction: 1

https://identifiers.org/wikipathways/WP143 has an metabolite not linked to an interaction: (S)-3-Hydroxytetradecanoyl-CoA

More details at https://www.wikipathways.org/WikiPathwaysCurator/IEMPathwayTests/allMetabolitesInteract

Too many InChIKeys for the used identifier

Non-zero count of metabolites with more than one InChIKey: 13

http://classic.wikipathways.org/instance/WP143_r136150 has: Trans-Oct-2-enoyl-CoA (CHEBI:27537) with InChIKeys: VJNXUFOTKNTNPG-YNJARDAQSA-O, CPSDNAXXKWVYIY-DPSCIZRPSA-N, CPSDNAXXKWVYIY-NTLMCJQISA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: Trans-Dec-2-enoyl-CoA (CHEBI:10723) with InChIKeys: MGNBGCRQQFMNBM-VHTAIFHGSA-N, MGNBGCRQQFMNBM-YJHHLLFWSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: 3-Oxopalmitoyl-CoA (CHEBI:15491) with InChIKeys: NQMPLXPCRJOSHL-TZIIWEFPSA-N, NQMPLXPCRJOSHL-BBECNAHFSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: Myristoyl-CoA (CHEBI:15532) with InChIKeys: DUAFKXOFBZQTQE-QSGBVPJFSA-N, DUAFKXOFBZQTQE-XVDJLSDJSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: (S)-3-Hydroxyhexadecanoyl-CoA (CHEBI:27402) with InChIKeys: DEHLMTDDPWDRDR-QQOJFMBSSA-N, DEHLMTDDPWDRDR-BCIKBWLNSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: (S)-3-Hydroxytetradecanoyl-CoA (CHEBI:27466) with InChIKeys: OXBHKMHNDGRDCZ-UOBIXJHKSA-N, OXBHKMHNDGRDCZ-STLSENOWSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: 3-Oxohexanoyl-CoA (CHEBI:27648) with InChIKeys: NFOYYXQAVVYWKV-ZOGSZLKASA-N, NFOYYXQAVVYWKV-HDRQGHTBSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: cis,cis-3,6-Dodecadienoyl-CoA (CHEBI:28002) with InChIKeys: KEPSPLQXVPROMK-ASJCJLDXSA-N, KEPSPLQXVPROMK-GXFXHJQUSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: 3-Oxo-octanoyl-CoA (CHEBI:28264) with InChIKeys: WPIVBCGRGVNDDT-FFJUWABQSA-N, WPIVBCGRGVNDDT-CECATXLMSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: (S)-3-Hydroxydecanoyl-CoA (CHEBI:28325) with InChIKeys: HIVSMYZAMUNFKZ-PNPVFPMQSA-N, HIVSMYZAMUNFKZ-WQUYVQPTSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: Decanoyl-CoA (CHEBI:28493) with InChIKeys: CNKJPHSEFDPYDB-BOJFXZHGSA-N, CNKJPHSEFDPYDB-HSJNEKGZSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: (S)-3-Hydroxyoctanoyl-CoA (CHEBI:28632) with InChIKeys: ATVGTMKWKDUCMS-FZQVHTIWSA-N, ATVGTMKWKDUCMS-OTOYJEMWSA-N
http://classic.wikipathways.org/instance/WP143_r136150 has: Trans-Hex-2-enoyl-CoA (CHEBI:28706) with InChIKeys: OINXHIBNZUUIMR-IXUYQXAASA-N, OINXHIBNZUUIMR-DOSZRKKKSA-N

More details at https://www.wikipathways.org/WikiPathwaysCurator/MetabolitesTests/tooManyInChIKeys