Mesodermal commitment pathway (WP3183)
Bos taurus
Model depicting mesodermal specification based on the literature and highly enriched gene expression profiles via comparison across dozens of independent induced and embryonic pluripotent stem cell lines, following differentiation to multiple lineages (ectoderm, mesoderm, endoderm, embryoid body). The underlying genomic data can be obtained from: https://www.synapse.org/#!Synapse:syn1773109
Authors
Martina Summer-Kutmon , Elisa Cirillo , and Eric WeitzActivity
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Organisms
Bos taurusCommunities
Annotations
Pathway Ontology
regulatory pathway| Label | Type | Compact URI | Comment |
|---|---|---|---|
| HES7 | GeneProduct | ensembl:ENSBTAG00000012436 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000179111 |
| DLL1 | GeneProduct | ensembl:ENSBTAG00000031476 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000198719 |
| bta-mir-302c | GeneProduct | ensembl:ENSBTAG00000036429 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000199102 |
| TBX6 | GeneProduct | ensembl:ENSBTAG00000009046 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000149922 |
| SMAD6 | GeneProduct | ensembl:ENSBTAG00000000625 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000137834 |
| LATS1 | GeneProduct | ensembl:ENSBTAG00000015076 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000131023 |
| POU5F1 | GeneProduct | ensembl:ENSBTAG00000001873 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000204531 |
| MIXL1 | GeneProduct | ensembl:ENSBTAG00000002139 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000185155 |
| SOX2 | GeneProduct | ensembl:ENSBTAG00000011598 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000181449 |
| LEFTY1 | GeneProduct | ensembl:ENSBTAG00000002855 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000243709 |
| SOX17 | GeneProduct | ensembl:ENSBTAG00000005748 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000164736 |
| LEFTY2 | GeneProduct | ensembl:ENSBTAG00000002855 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000143768 |
| NANOG | GeneProduct | ensembl:ENSBTAG00000020916 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000111704 |
| FZD4 | GeneProduct | ensembl:ENSBTAG00000040128 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000174804 |
| FZD5 | GeneProduct | ensembl:ENSBTAG00000020957 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000163251 |
| FZD8 | GeneProduct | ensembl:ENSBTAG00000015072 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000177283 |
| FGF8 | GeneProduct | ensembl:ENSBTAG00000001530 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000107831 |
| AXIN2 | GeneProduct | ensembl:ENSBTAG00000030162 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000168646 |
| NFE2L2 | GeneProduct | ensembl:ENSBTAG00000019255 | HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000116044 |
References
- T (Brachyury) is a direct target of Wnt3a during paraxial mesoderm specification. Yamaguchi TP, Takada S, Yoshikawa Y, Wu N, McMahon AP. Genes Dev. 1999 Dec 15;13(24):3185–90. PubMed Europe PMC Scholia
- Hes7: a bHLH-type repressor gene regulated by Notch and expressed in the presomitic mesoderm. Bessho Y, Miyoshi G, Sakata R, Kageyama R. Genes Cells. 2001 Feb;6(2):175–85. PubMed Europe PMC Scholia
- Dll1 is a downstream target of Tbx6 in the paraxial mesoderm. White PH, Chapman DL. Genesis. 2005 Jul;42(3):193–202. PubMed Europe PMC Scholia
- The Nodal inhibitor Lefty is negatively modulated by the microRNA miR-302 in human embryonic stem cells. Barroso-delJesus A, Lucena-Aguilar G, Sanchez L, Ligero G, Gutierrez-Aranda I, Menendez P. FASEB J. 2011 May;25(5):1497–508. PubMed Europe PMC Scholia
- Tbx6-dependent Sox2 regulation determines neural or mesodermal fate in axial stem cells. Takemoto T, Uchikawa M, Yoshida M, Bell DM, Lovell-Badge R, Papaioannou VE, et al. Nature. 2011 Feb 17;470(7334):394–8. PubMed Europe PMC Scholia
- miR-125b promotes early germ layer specification through Lin28/let-7d and preferential differentiation of mesoderm in human embryonic stem cells. Wong SSY, Ritner C, Ramachandran S, Aurigui J, Pitt C, Chandra P, et al. PLoS One. 2012;7(4):e36121. PubMed Europe PMC Scholia