SARS-CoV-2-WikiPathways

WikiPathways WP5115

• WikiPathways: WP5115 (classic)
• Species: Homo sapiens
• Scholia: WP5115
• WPRDF file: wp/Human/WP5115.ttl
• GPMLRDF file: wp/gpml/Human/WP5115.ttl
• SBML file: sbml/WP5115.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 106
  • missingHGNC: .. all OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 13 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 111
• Number of assertions: 224
• Number of fails: 3

Fails

Interactions without references

Interactions without literature references: 106

• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b3e4b
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b552e
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f49b3
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c4634
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d18da
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/cd523
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c3e58
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/deb14
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/bf840
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/fad2e
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/afe30
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ba06f
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e0376
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a7345
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f9315
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f5231
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f9d6f
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c78ea
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c9745
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/adbed
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ce556
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/dcef8
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b1142
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e8dd0
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ac6b5
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b7fdf
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a5eab
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/fda95
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/bd57d
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a9e30
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f2c24
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/bd8ad
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/fef8f
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/ComplexBinding/ea5c2
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/eb371
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ec8e1
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d4a2f
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b3491
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e587f
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a0961
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ad499
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e7eec
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/cab15
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/fcdd5
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e9fdb
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d0390
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a01c9
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/fb7e0
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b39e9
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f30d3
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e61e3
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e4836
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c0131
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d4ad0
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f31a7
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ecb5c
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a865e
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/cb54e
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c80d0
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e2837
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/eb96e
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/dad3d
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d7f42
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/dca0f
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b7b9b
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ed33f
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f0d90
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d186c
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/bb111
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b2e11
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/de4ea
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e4c43
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ca119
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/cff8d
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/bdabe
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f803b
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e4c69
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e2984
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/f8cb6
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a72b9
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c5fe1
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ff17f
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a4244
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d70cd
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c6e65
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b9bfc
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d6c12
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c1ab3
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/bf6be
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d80dd
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/be218
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ec0db
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e8cb4
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/b64c4
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e80e7
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/c0836
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a743f
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ef360
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/a6b31
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e24c2
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/e0e18
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/cd332
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/ac639
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/cf1fb
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d810c
• http://classic.wikipathways.org/instance/WP5115_r134657 -> http://rdf.wikipathways.org/Pathway/WP5115_r134657/WP/Interaction/d9a31

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP5115_r134657 http://rdf.wikipathways.org/Pathway/WP5115_r134657/DataNode/fdf13 (TLRs)
• http://classic.wikipathways.org/instance/WP5115_r134657 http://rdf.wikipathways.org/Pathway/WP5115_r134657/DataNode/1776957250 (VEGFA)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 1

• http://classic.wikipathways.org/instance/WP5115_r134657 “Apoptosis” with graphId d7fd1

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

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