SARS-CoV-2-WikiPathways

WikiPathways WP5027

• WikiPathways: WP5027 (classic)
• Species: Homo sapiens
• Scholia: WP5027
• WPRDF file: wp/Human/WP5027.ttl
• GPMLRDF file: wp/gpml/Human/WP5027.ttl
• SBML file: sbml/WP5027.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 8
  • missingHGNC: .. all OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 3
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 1
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 13 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 111
• Number of assertions: 224
• Number of fails: 4

Fails

Interactions without references

Interactions without literature references: 8

• http://classic.wikipathways.org/instance/WP5027_r124644 -> http://rdf.wikipathways.org/Pathway/WP5027_r124644/WP/Interaction/id8da43876
• http://classic.wikipathways.org/instance/WP5027_r124644 -> http://rdf.wikipathways.org/Pathway/WP5027_r124644/ComplexBinding/b327e
• http://classic.wikipathways.org/instance/WP5027_r124644 -> http://rdf.wikipathways.org/Pathway/WP5027_r124644/ComplexBinding/b97c5
• http://classic.wikipathways.org/instance/WP5027_r124644 -> http://rdf.wikipathways.org/Pathway/WP5027_r124644/WP/Interaction/id8b1ce7b7
• http://classic.wikipathways.org/instance/WP5027_r124644 -> http://rdf.wikipathways.org/Pathway/WP5027_r124644/ComplexBinding/ed8b6
• http://classic.wikipathways.org/instance/WP5027_r124644 -> http://rdf.wikipathways.org/Pathway/WP5027_r124644/WP/Interaction/idad839e9d
• http://classic.wikipathways.org/instance/WP5027_r124644 -> http://rdf.wikipathways.org/Pathway/WP5027_r124644/WP/Interaction/id573935d6
• http://classic.wikipathways.org/instance/WP5027_r124644 -> http://rdf.wikipathways.org/Pathway/WP5027_r124644/ComplexBinding/d6fe1

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Data nodes without an identifier

The following DataNodes have no identifier: 3

• http://classic.wikipathways.org/instance/WP5027_r124644 http://rdf.wikipathways.org/Pathway/WP5027_r124644/DataNode/dea7c (43S Pre-initiation Complex)
• http://classic.wikipathways.org/instance/WP5027_r124644 http://rdf.wikipathways.org/Pathway/WP5027_r124644/DataNode/c97c9 (Ternary complex)
• http://classic.wikipathways.org/instance/WP5027_r124644 http://rdf.wikipathways.org/Pathway/WP5027_r124644/DataNode/d2c3b (Ternary complex)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 1

• http://classic.wikipathways.org/instance/WP5027_r124644 http://rdf.wikipathways.org/Pathway/WP5027_r124644/DataNode/dea7c (43S Pre-initiation Complex)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

Interactions with Labels

Interactions found that involve Labels: 1

• http://classic.wikipathways.org/instance/WP5027_r124644 “Load mRNA and start translation” with graphId dfc42

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

This site is open source. Improve this page.