SARS-CoV-2-WikiPathways

WikiPathways WP4880

• WikiPathways: WP4880 (classic)
• Species: Homo sapiens
• Scholia: WP4880
• WPRDF file: wp/Human/WP4880.ttl
• GPMLRDF file: wp/gpml/Human/WP4880.ttl
• SBML file: sbml/WP4880.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 29
  • missingHGNC: .. all OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 1
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 13 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 111
• Number of assertions: 224
• Number of fails: 3

Fails

Interactions without references

Interactions without literature references: 29

• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/ComplexBinding/f5415
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/ComplexBinding/f7910
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/ComplexBinding/bc0e3
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/ComplexBinding/e2203
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/ba761
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/id4db933d9
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/ff758
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/id764393e3
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/a9f45
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/idfc1498e4
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/dca81
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/ComplexBinding/ebc96
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/ComplexBinding/fc0ce
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/e3799
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/id981e6cb4
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/id7c297d34
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/ad7f1
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/ComplexBinding/b8407
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/ff46e
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/a4cdc
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/fa9c7
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/d52dc
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/edd33
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/c6c90
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/id72e167d2
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/b1a40
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/ef27c
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/de9af
• http://classic.wikipathways.org/instance/WP4880_r128661 -> http://rdf.wikipathways.org/Pathway/WP4880_r128661/WP/Interaction/id82ecd04c

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP4880_r128661 http://rdf.wikipathways.org/Pathway/WP4880_r128661/DataNode/a9f04 (INF-I)
• http://classic.wikipathways.org/instance/WP4880_r128661 http://rdf.wikipathways.org/Pathway/WP4880_r128661/DataNode/cae33 (INF-I)
• http://classic.wikipathways.org/instance/WP4880_r128661 http://rdf.wikipathways.org/Pathway/WP4880_r128661/DataNode/f1657 (INF-I)
• http://classic.wikipathways.org/instance/WP4880_r128661 http://rdf.wikipathways.org/Pathway/WP4880_r128661/DataNode/f1bfb (ISGs)
• http://classic.wikipathways.org/instance/WP4880_r128661 http://rdf.wikipathways.org/Pathway/WP4880_r128661/DataNode/b94d2 (ISRE)
• http://classic.wikipathways.org/instance/WP4880_r128661 http://rdf.wikipathways.org/Pathway/WP4880_r128661/DataNode/ca597 (ISRE)
• http://classic.wikipathways.org/instance/WP4880_r128661 http://rdf.wikipathways.org/Pathway/WP4880_r128661/DataNode/e7c25 (Viral RNA)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 1

• http://classic.wikipathways.org/instance/WP4880_r128661 http://rdf.wikipathways.org/Pathway/WP4880_r128661/DataNode/c3ff5 (PAMP)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

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